Chlorine in PDB 8t9t: Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter
Protein crystallography data
The structure of Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter, PDB code: 8t9t
was solved by
M.C.Newton-Vesty,
R.C.J.Dobson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.67 /
1.48
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.925,
72.997,
95.24,
90,
90,
90
|
R / Rfree (%)
|
17 /
20.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter
(pdb code 8t9t). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter, PDB code: 8t9t:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8t9t
Go back to
Chlorine Binding Sites List in 8t9t
Chlorine binding site 1 out
of 2 in the Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl404
b:35.8
occ:1.00
|
HD21
|
A:ASN259
|
2.9
|
35.9
|
1.0
|
HB2
|
A:SER60
|
3.1
|
24.6
|
1.0
|
HB2
|
A:ARG63
|
3.1
|
30.8
|
0.0
|
O
|
A:HOH867
|
3.2
|
44.2
|
1.0
|
HG22
|
A:VAL64
|
3.3
|
23.3
|
1.0
|
HD22
|
A:ASN259
|
3.3
|
35.8
|
1.0
|
ND2
|
A:ASN259
|
3.4
|
39.0
|
1.0
|
HG23
|
A:VAL260
|
3.5
|
21.3
|
1.0
|
HA
|
A:SER60
|
3.6
|
26.3
|
1.0
|
HD11
|
A:ILE263
|
3.6
|
26.4
|
1.0
|
CB
|
A:ARG63
|
3.8
|
30.9
|
1.0
|
HD13
|
A:ILE263
|
3.8
|
26.4
|
1.0
|
HD12
|
A:ILE263
|
3.8
|
26.4
|
1.0
|
CB
|
A:SER60
|
3.9
|
23.9
|
1.0
|
CD1
|
A:ILE263
|
3.9
|
27.1
|
1.0
|
CG2
|
A:VAL64
|
4.1
|
23.8
|
1.0
|
HB3
|
A:SER60
|
4.1
|
24.6
|
1.0
|
HG21
|
A:VAL64
|
4.1
|
23.3
|
1.0
|
HB3
|
A:ARG63
|
4.1
|
30.8
|
0.0
|
CA
|
A:SER60
|
4.2
|
26.5
|
1.0
|
O
|
A:SER60
|
4.2
|
28.1
|
1.0
|
CG2
|
A:VAL260
|
4.3
|
21.6
|
1.0
|
HG22
|
A:VAL260
|
4.3
|
21.3
|
1.0
|
HG23
|
A:VAL64
|
4.3
|
23.3
|
1.0
|
HG21
|
A:VAL260
|
4.6
|
21.3
|
1.0
|
CG
|
A:ASN259
|
4.6
|
30.0
|
1.0
|
C
|
A:SER60
|
4.7
|
28.9
|
1.0
|
O
|
A:HOH864
|
4.8
|
47.3
|
1.0
|
HA
|
A:VAL260
|
5.0
|
20.9
|
1.0
|
CA
|
A:ARG63
|
5.0
|
30.1
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8t9t
Go back to
Chlorine Binding Sites List in 8t9t
Chlorine binding site 2 out
of 2 in the Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Apo Crystal Structure of A Substrate Binding Protein (Isep) From An Isethionate Trap Transporter within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:40.6
occ:1.00
|
O
|
A:HOH569
|
2.8
|
33.4
|
1.0
|
O
|
A:HOH748
|
2.9
|
32.0
|
1.0
|
HA
|
A:THR179
|
3.0
|
18.2
|
1.0
|
H
|
A:ASP180
|
3.2
|
20.5
|
0.3
|
H
|
A:ASP180
|
3.2
|
20.6
|
0.7
|
HA
|
A:SER199
|
3.2
|
22.3
|
1.0
|
HH22
|
A:ARG177
|
3.3
|
18.9
|
1.0
|
HO2
|
A:EDO401
|
3.6
|
34.9
|
0.0
|
HB
|
A:THR179
|
3.6
|
19.6
|
1.0
|
HH21
|
A:ARG177
|
3.7
|
18.8
|
1.0
|
NH2
|
A:ARG177
|
3.8
|
19.4
|
1.0
|
N
|
A:ASP180
|
3.8
|
20.5
|
1.0
|
CA
|
A:THR179
|
3.8
|
17.8
|
1.0
|
O2
|
A:EDO401
|
3.9
|
35.0
|
1.0
|
OD1
|
A:ASP180
|
4.0
|
28.5
|
0.3
|
O
|
A:ILE198
|
4.1
|
20.2
|
1.0
|
OD1
|
A:ASP180
|
4.1
|
28.9
|
0.7
|
O
|
A:HOH675
|
4.1
|
34.8
|
1.0
|
HB3
|
A:ASP180
|
4.1
|
23.5
|
0.3
|
H
|
A:TRP200
|
4.1
|
21.1
|
1.0
|
CG
|
A:ASP180
|
4.1
|
24.8
|
0.7
|
CG
|
A:ASP180
|
4.2
|
23.1
|
0.3
|
C
|
A:THR179
|
4.2
|
19.0
|
1.0
|
CB
|
A:THR179
|
4.2
|
19.1
|
1.0
|
CA
|
A:SER199
|
4.2
|
22.6
|
1.0
|
HG23
|
A:THR179
|
4.2
|
20.0
|
1.0
|
HB2
|
A:ASP180
|
4.2
|
24.3
|
0.7
|
OD2
|
A:ASP180
|
4.4
|
31.4
|
0.7
|
CB
|
A:ASP180
|
4.5
|
24.1
|
0.3
|
CB
|
A:ASP180
|
4.6
|
24.9
|
0.7
|
OD2
|
A:ASP180
|
4.6
|
28.6
|
0.3
|
C
|
A:ILE198
|
4.6
|
20.2
|
1.0
|
N
|
A:SER199
|
4.7
|
21.2
|
1.0
|
N
|
A:TRP200
|
4.7
|
21.1
|
1.0
|
CG2
|
A:THR179
|
4.8
|
20.4
|
1.0
|
CA
|
A:ASP180
|
4.8
|
22.6
|
0.3
|
CA
|
A:ASP180
|
4.8
|
22.8
|
0.7
|
C
|
A:SER199
|
4.9
|
20.5
|
1.0
|
O
|
A:THR178
|
4.9
|
18.1
|
1.0
|
CZ
|
A:ARG177
|
4.9
|
17.4
|
1.0
|
HB2
|
A:SER199
|
5.0
|
24.2
|
1.0
|
|
Reference:
M.C.Newton-Vesty,
R.C.J.Dobson.
Isethionate Trap Transporter Substrate Binding Protein Structure and Function To Be Published.
Page generated: Tue Jul 30 12:44:47 2024
|