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Chlorine in PDB 8tkz: Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4

Protein crystallography data

The structure of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4, PDB code: 8tkz was solved by A.Jacewicz, A.M.Sanchez, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.42 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.109, 91.163, 106.813, 90, 90, 90
R / Rfree (%) 17.4 / 22.7

Other elements in 8tkz:

The structure of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 also contains other interesting chemical elements:

Sodium (Na) 1 atom
Zinc (Zn) 2 atoms
Cobalt (Co) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 (pdb code 8tkz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4, PDB code: 8tkz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8tkz

Go back to Chlorine Binding Sites List in 8tkz
Chlorine binding site 1 out of 2 in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl508

b:34.1
occ:0.71
O B:HOH723 3.2 24.9 1.0
O B:HOH724 3.3 23.1 1.0
NE1 B:TRP113 3.4 23.7 1.0
NE1 B:TRP30 3.5 29.4 1.0
CZ2 B:TRP30 3.7 22.0 1.0
CE2 B:PHE287 3.7 20.6 1.0
SG B:CYS25 3.7 35.7 1.0
CE2 B:TRP30 3.9 27.5 1.0
CE2 B:TRP113 4.0 24.0 1.0
O B:HOH766 4.0 39.6 1.0
CD2 B:PHE287 4.1 25.3 1.0
CZ2 B:TRP113 4.1 27.5 1.0
NH1 B:ARG371 4.2 27.2 1.0
CD1 B:TRP113 4.3 24.8 1.0
CB B:CYS25 4.4 23.6 1.0
CD1 B:TRP30 4.7 33.4 1.0
CZ B:PHE287 4.8 16.8 1.0
CH2 B:TRP30 4.9 26.2 1.0
O B:HOH692 4.9 30.1 1.0

Chlorine binding site 2 out of 2 in 8tkz

Go back to Chlorine Binding Sites List in 8tkz
Chlorine binding site 2 out of 2 in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl509

b:59.2
occ:0.92
N B:VAL87 3.0 33.2 1.0
O B:HOH763 3.0 50.5 1.0
CA B:LEU86 3.6 27.2 1.0
C B:LEU86 3.8 32.8 1.0
O B:VAL87 3.8 39.9 1.0
CB B:VAL87 3.9 41.9 1.0
CA B:VAL87 3.9 38.5 1.0
CG1 B:ILE123 4.2 24.9 1.0
O B:PRO85 4.2 26.7 1.0
CD1 B:LEU126 4.3 29.8 1.0
CD2 B:LEU86 4.3 25.9 1.0
CB B:LEU86 4.3 30.0 1.0
CD1 B:ILE123 4.3 22.7 1.0
C B:VAL87 4.3 37.3 1.0
CG2 B:VAL87 4.4 42.5 1.0
O B:HOH779 4.7 37.1 1.0
N B:LEU86 4.7 27.8 1.0
C B:PRO85 4.9 28.9 1.0
O B:LEU86 5.0 32.0 1.0
CG B:LEU86 5.0 27.7 1.0

Reference:

A.Jacewicz, A.M.Sanchez, S.Shuman. Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 To Be Published.
Page generated: Tue Jul 30 12:53:24 2024

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