Chlorine in PDB 8tuz: Fab 857-2 in Complex with Ospa
Protein crystallography data
The structure of Fab 857-2 in Complex with Ospa, PDB code: 8tuz
was solved by
M.J.Rudolph,
N.Mantis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.89 /
2.19
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.847,
124.501,
144.349,
90,
90,
90
|
R / Rfree (%)
|
17.7 /
23.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Fab 857-2 in Complex with Ospa
(pdb code 8tuz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
Fab 857-2 in Complex with Ospa, PDB code: 8tuz:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 8tuz
Go back to
Chlorine Binding Sites List in 8tuz
Chlorine binding site 1 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl303
b:68.1
occ:1.00
|
O
|
L:HOH482
|
2.8
|
66.5
|
1.0
|
O
|
L:LEU98
|
3.5
|
40.9
|
1.0
|
CE3
|
H:TRP47
|
3.5
|
38.6
|
1.0
|
N
|
L:LEU98
|
3.5
|
32.8
|
1.0
|
CG
|
L:ARG97
|
3.6
|
50.5
|
1.0
|
OG
|
H:SER61
|
3.6
|
46.1
|
1.0
|
CZ3
|
H:TRP47
|
3.6
|
45.5
|
1.0
|
CB
|
L:ARG97
|
3.7
|
44.2
|
1.0
|
CA
|
L:ARG97
|
3.7
|
36.8
|
1.0
|
O
|
L:HOH479
|
3.8
|
61.6
|
1.0
|
O
|
H:HOH402
|
4.0
|
46.9
|
1.0
|
C
|
L:ARG97
|
4.1
|
45.0
|
1.0
|
C
|
L:LEU98
|
4.2
|
41.2
|
1.0
|
CB
|
H:SER61
|
4.3
|
48.4
|
1.0
|
CD
|
H:PRO62
|
4.4
|
47.9
|
1.0
|
CA
|
L:LEU98
|
4.5
|
38.5
|
1.0
|
CG
|
H:PRO62
|
4.5
|
50.2
|
1.0
|
CA
|
H:SER61
|
4.7
|
41.7
|
1.0
|
CD
|
L:ARG97
|
4.7
|
53.8
|
1.0
|
OG1
|
L:THR99
|
4.8
|
58.9
|
1.0
|
CD2
|
H:TRP47
|
4.8
|
41.4
|
1.0
|
O
|
L:HOH420
|
4.8
|
40.4
|
1.0
|
O
|
L:HIS96
|
4.8
|
44.9
|
1.0
|
O
|
H:PRO62
|
4.9
|
74.1
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 8tuz
Go back to
Chlorine Binding Sites List in 8tuz
Chlorine binding site 2 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl304
b:83.0
occ:1.00
|
OD2
|
H:ASP217
|
3.3
|
63.7
|
1.0
|
CG
|
H:ASP217
|
4.4
|
59.2
|
1.0
|
O
|
H:HOH499
|
4.6
|
54.6
|
1.0
|
CB
|
H:ASP217
|
4.8
|
47.4
|
1.0
|
O
|
H:HOH481
|
5.0
|
52.4
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 8tuz
Go back to
Chlorine Binding Sites List in 8tuz
Chlorine binding site 3 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl305
b:80.5
occ:1.00
|
N
|
H:ALA146
|
3.3
|
45.0
|
1.0
|
CA
|
H:ALA145
|
3.6
|
44.5
|
1.0
|
O
|
H:HOH445
|
3.7
|
65.9
|
1.0
|
N
|
H:SER136
|
3.8
|
62.1
|
1.0
|
CB
|
H:ALA145
|
3.8
|
41.5
|
1.0
|
CD1
|
L:PHE118
|
3.9
|
38.2
|
1.0
|
O
|
H:ALA146
|
3.9
|
42.9
|
1.0
|
C
|
H:ALA145
|
4.0
|
46.2
|
1.0
|
CE1
|
L:PHE118
|
4.3
|
36.2
|
1.0
|
CB
|
H:SER136
|
4.3
|
78.8
|
1.0
|
CA
|
H:ALA146
|
4.3
|
38.8
|
1.0
|
CA
|
H:PRO135
|
4.4
|
50.0
|
1.0
|
CB
|
H:ALA146
|
4.6
|
38.8
|
1.0
|
C
|
H:ALA146
|
4.6
|
37.4
|
1.0
|
CB
|
H:PRO135
|
4.6
|
52.5
|
1.0
|
CA
|
H:SER136
|
4.6
|
75.1
|
1.0
|
O
|
H:THR144
|
4.6
|
49.3
|
1.0
|
C
|
H:PRO135
|
4.6
|
54.6
|
1.0
|
O
|
H:SER136
|
4.8
|
81.3
|
1.0
|
N
|
H:ALA145
|
4.9
|
43.1
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 8tuz
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Chlorine Binding Sites List in 8tuz
Chlorine binding site 4 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl306
b:122.6
occ:1.00
|
N
|
H:LEU179
|
3.4
|
31.3
|
1.0
|
CA
|
H:VAL178
|
3.9
|
35.5
|
1.0
|
C
|
H:VAL178
|
4.2
|
32.7
|
1.0
|
CB
|
H:LEU179
|
4.2
|
35.0
|
1.0
|
CG1
|
H:VAL178
|
4.2
|
52.5
|
1.0
|
CA
|
H:LEU179
|
4.3
|
31.7
|
1.0
|
O
|
H:LEU179
|
4.3
|
35.3
|
1.0
|
CG2
|
H:VAL178
|
4.4
|
52.8
|
1.0
|
CB
|
H:VAL178
|
4.4
|
48.1
|
1.0
|
NE2
|
L:GLN162
|
4.7
|
42.8
|
1.0
|
O
|
H:ALA177
|
4.7
|
31.2
|
1.0
|
C
|
H:LEU179
|
4.8
|
32.8
|
1.0
|
O
|
H:HOH493
|
4.8
|
58.7
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 8tuz
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Chlorine Binding Sites List in 8tuz
Chlorine binding site 5 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl302
b:77.3
occ:1.00
|
N
|
L:HIS96
|
3.5
|
54.7
|
1.0
|
CB
|
L:PRO95
|
3.6
|
63.4
|
1.0
|
CA
|
L:PRO95
|
3.6
|
57.4
|
1.0
|
C
|
L:PRO95
|
4.1
|
47.3
|
1.0
|
CD
|
H:ARG59
|
4.2
|
66.6
|
1.0
|
CB
|
L:HIS96
|
4.3
|
42.5
|
1.0
|
O
|
L:GLY93
|
4.4
|
93.4
|
1.0
|
NE
|
H:ARG59
|
4.4
|
71.7
|
1.0
|
CA
|
L:HIS96
|
4.5
|
39.8
|
1.0
|
CG
|
H:ARG59
|
4.6
|
52.2
|
1.0
|
N
|
L:PRO95
|
5.0
|
62.5
|
1.0
|
CZ
|
H:ARG59
|
5.0
|
61.6
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 8tuz
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Chlorine Binding Sites List in 8tuz
Chlorine binding site 6 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:79.9
occ:1.00
|
O
|
A:GLY142
|
3.8
|
51.6
|
1.0
|
O
|
A:LEU162
|
3.9
|
47.9
|
1.0
|
C
|
A:LEU162
|
4.2
|
46.7
|
1.0
|
O
|
A:HOH464
|
4.2
|
41.0
|
1.0
|
C
|
A:GLY142
|
4.3
|
47.1
|
1.0
|
CA
|
A:LYS163
|
4.4
|
49.0
|
1.0
|
N
|
A:LYS163
|
4.4
|
43.5
|
1.0
|
CG1
|
A:VAL161
|
4.5
|
37.0
|
1.0
|
O
|
A:VAL161
|
4.5
|
41.6
|
1.0
|
N
|
A:THR143
|
4.6
|
41.5
|
1.0
|
CA
|
A:THR143
|
4.7
|
42.3
|
1.0
|
O
|
A:HOH424
|
4.7
|
50.4
|
1.0
|
O
|
A:HOH444
|
4.8
|
46.0
|
1.0
|
CA
|
A:LEU162
|
5.0
|
43.4
|
1.0
|
C
|
A:VAL161
|
5.0
|
38.1
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 8tuz
Go back to
Chlorine Binding Sites List in 8tuz
Chlorine binding site 7 out
of 7 in the Fab 857-2 in Complex with Ospa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Fab 857-2 in Complex with Ospa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl305
b:81.9
occ:1.00
|
O
|
A:HOH477
|
2.3
|
54.7
|
1.0
|
O
|
A:VAL179
|
2.9
|
54.2
|
1.0
|
N
|
A:GLU168
|
3.2
|
50.0
|
1.0
|
O
|
A:VAL166
|
3.6
|
51.3
|
1.0
|
CA
|
A:LEU167
|
3.7
|
49.4
|
1.0
|
C
|
A:LEU167
|
4.0
|
55.0
|
1.0
|
CG2
|
A:VAL180
|
4.0
|
45.4
|
1.0
|
C
|
A:VAL179
|
4.1
|
56.0
|
1.0
|
O
|
A:GLU168
|
4.1
|
45.5
|
1.0
|
CA
|
A:GLU168
|
4.2
|
50.9
|
1.0
|
CB
|
A:GLU168
|
4.3
|
54.3
|
1.0
|
CD2
|
A:LEU167
|
4.5
|
42.4
|
1.0
|
CB
|
A:LEU167
|
4.5
|
44.7
|
1.0
|
CA
|
A:VAL180
|
4.5
|
51.4
|
1.0
|
C
|
A:VAL166
|
4.5
|
45.7
|
1.0
|
N
|
A:LEU167
|
4.6
|
47.9
|
1.0
|
C
|
A:GLU168
|
4.7
|
46.5
|
1.0
|
N
|
A:VAL180
|
4.7
|
56.6
|
1.0
|
CB
|
A:VAL180
|
4.7
|
47.7
|
1.0
|
O
|
A:HOH472
|
4.7
|
58.1
|
1.0
|
CD1
|
A:LEU265
|
4.8
|
38.9
|
1.0
|
CG
|
A:GLU168
|
4.9
|
68.5
|
1.0
|
CG1
|
A:VAL180
|
5.0
|
46.1
|
1.0
|
N
|
A:VAL179
|
5.0
|
47.8
|
1.0
|
|
Reference:
M.J.Rudolph,
N.Mantis.
Fab 857-2 in Complex with Ospa To Be Published.
Page generated: Sat Sep 28 19:30:46 2024
|