Chlorine in PDB 8u0r: The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex

Protein crystallography data

The structure of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex, PDB code: 8u0r was solved by U.Diesterbeck, A.G.Gittis, D.N.Garboczi, B.Moss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.31 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.86, 70.06, 78.95, 90, 95.29, 90
R / Rfree (%) 21.1 / 23.9

Other elements in 8u0r:

The structure of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex also contains other interesting chemical elements:

Iodine (I) 12 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex (pdb code 8u0r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex, PDB code: 8u0r:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 1 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:56.7
occ:1.00
 OD1 A:ASN68 2.8 58.6 1.0
CG A:ASN68 3.2 59.7 1.0
ND2 A:ASN68 3.2 59.9 1.0
N A:ASN68 3.9 40.3 1.0
CB A:ASP67 4.1 42.5 1.0
CG A:ASP67 4.1 45.0 1.0
OD2 A:ASP67 4.1 50.7 1.0
CG A:LYS69 4.2 54.8 1.0
CB A:ASN68 4.3 51.1 1.0
N A:LYS69 4.5 48.0 1.0
CA A:ASN68 4.6 46.4 1.0
NZ A:LYS69 4.6 61.0 1.0
OD1 A:ASP67 4.7 45.8 1.0
C A:ASN68 4.8 47.8 1.0
C A:ASP67 4.9 46.1 1.0
CB A:LYS69 5.0 51.0 1.0

Chlorine binding site 2 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 2 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:71.8
occ:0.95
 O A:HOH307 3.4 63.5 1.0
N A:GLY101 4.2 52.9 1.0
CA A:GLY101 4.7 48.6 1.0
CB A:PRO100 4.8 55.8 1.0
C A:PRO100 4.9 49.2 1.0

Chlorine binding site 3 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 3 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:69.9
occ:0.90
 N A:ARG104 3.7 44.8 1.0
CA A:GLY101 3.9 48.6 1.0
CB A:ALA103 3.9 46.2 1.0
O A:HOH308 4.0 47.9 1.0
CB A:ARG104 4.1 49.8 1.0
C A:GLY101 4.2 48.6 1.0
N A:ALA103 4.2 45.8 1.0
CA A:ALA103 4.4 48.5 1.0
C A:ALA103 4.5 47.6 1.0
O A:GLY101 4.5 50.1 1.0
CA A:ARG104 4.5 47.4 1.0
N A:GLY101 4.5 52.9 1.0
O A:HOH307 4.6 63.5 1.0
N A:PHE102 4.7 47.2 1.0

Chlorine binding site 4 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 4 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl212

b:55.3
occ:1.00
 N B:ARG104 3.6 37.3 1.0
CA B:GLY101 3.7 35.1 1.0
CB B:ARG104 4.0 39.1 1.0
O B:HOH315 4.1 43.9 1.0
C B:GLY101 4.1 39.9 1.0
N B:ALA103 4.2 38.4 1.0
CA B:ALA103 4.4 38.4 1.0
C B:ALA103 4.4 37.3 1.0
CA B:ARG104 4.4 38.7 1.0
N B:GLY101 4.5 40.7 1.0
O B:GLY101 4.5 38.0 1.0
N B:PHE102 4.6 38.2 1.0
CL B:CL213 4.9 67.0 1.0

Chlorine binding site 5 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 5 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl213

b:67.0
occ:1.00
 NH1 B:ARG104 3.2 49.8 1.0
CD B:ARG104 4.0 46.1 1.0
I B:IOD211 4.3 69.8 0.7
CZ B:ARG104 4.4 51.2 1.0
NE B:ARG104 4.6 47.2 1.0
CB B:ARG104 4.7 39.1 1.0
CG B:ARG104 4.7 40.0 1.0
CL B:CL212 4.9 55.3 1.0

Chlorine binding site 6 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 6 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl208

b:66.9
occ:1.00
 N C:ALA103 3.7 36.0 1.0
N C:PHE102 3.8 39.8 1.0
O C:HOH309 3.8 34.3 1.0
O C:ILE99 3.9 40.6 1.0
CB C:PHE102 4.1 37.7 1.0
CB C:ALA103 4.2 40.9 1.0
CA C:PHE102 4.3 42.6 1.0
O C:ARG96 4.4 44.9 1.0
C C:PHE102 4.5 37.1 1.0
N C:GLY101 4.5 42.3 1.0
C C:GLY101 4.6 40.4 1.0
CA C:ALA103 4.6 44.0 1.0
CA C:GLY101 4.8 40.0 1.0

Chlorine binding site 7 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 7 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl208

b:67.2
occ:1.00
 CD1 D:PHE55 4.0 65.9 1.0
CE1 D:PHE55 4.0 72.0 1.0
CA D:ASN54 4.0 56.8 1.0
N D:PHE55 4.0 54.7 1.0
CB D:ASN54 4.3 51.0 1.0
C D:ASN54 4.5 53.5 1.0
O D:TYR53 4.7 55.8 1.0
CG D:ASN54 4.9 56.7 1.0
O D:PHE55 5.0 69.5 1.0

Chlorine binding site 8 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 8 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl208

b:48.6
occ:0.85
 N F:ARG104 3.5 41.0 1.0
O F:HOH313 3.7 50.0 1.0
CA F:GLY101 3.8 43.4 1.0
CB F:ARG104 4.0 43.9 1.0
CB F:ALA103 4.0 41.4 1.0
C F:GLY101 4.1 43.5 1.0
N F:ALA103 4.2 39.9 1.0
CA F:ARG104 4.3 44.1 1.0
C F:ALA103 4.4 42.5 1.0
CA F:ALA103 4.4 43.5 1.0
N F:GLY101 4.5 40.4 1.0
O F:GLY101 4.6 40.4 1.0
N F:PHE102 4.6 41.1 1.0

Chlorine binding site 9 out of 9 in 8u0r

Go back to Chlorine Binding Sites List in 8u0r
Chlorine binding site 9 out of 9 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl209

b:67.0
occ:1.00
 O F:HOH305 3.0 61.1 1.0
NZ F:LYS63 3.3 45.4 1.0
O C:HOH317 3.3 50.4 0.8
CZ F:PHE43 3.8 39.4 1.0
CE1 F:PHE43 4.1 46.1 1.0
CE F:LYS63 4.2 41.5 1.0
O F:LYS85 4.3 55.9 1.0
CG2 F:THR89 4.3 33.6 1.0
CB F:LYS85 4.8 63.6 1.0
CE2 F:PHE43 5.0 38.6 1.0

Reference:

U.Diesterbeck, A.Tak, A.G.Gittis, D.N.Garboczi, B.Moss. The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex To Be Published.
Page generated: Sat Sep 28 19:33:29 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy