Chlorine in PDB 8u2s: Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
Protein crystallography data
The structure of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form), PDB code: 8u2s
was solved by
Seattle Structural Genomics Center For Infectious Disease,
Seattlestructural Genomics Center For Infectious Disease (Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
91.08 /
2.52
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
91.206,
61.815,
134.81,
90,
92.98,
90
|
R / Rfree (%)
|
18.6 /
21.9
|
Other elements in 8u2s:
The structure of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
(pdb code 8u2s). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the
Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form), PDB code: 8u2s:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 14 in 8u2s
Go back to
Chlorine Binding Sites List in 8u2s
Chlorine binding site 1 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl805
b:88.8
occ:1.00
|
NH2
|
A:ARG636
|
3.3
|
69.4
|
1.0
|
NH1
|
A:ARG636
|
3.7
|
67.7
|
1.0
|
CZ
|
A:ARG636
|
4.0
|
72.0
|
1.0
|
CB
|
A:PRO641
|
4.6
|
45.2
|
1.0
|
NZ
|
A:LYS240
|
4.8
|
103.3
|
1.0
|
|
Chlorine binding site 2 out
of 14 in 8u2s
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Chlorine Binding Sites List in 8u2s
Chlorine binding site 2 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl806
b:75.5
occ:1.00
|
NZ
|
A:LYS113
|
2.7
|
87.4
|
1.0
|
CE
|
A:LYS113
|
4.0
|
82.5
|
1.0
|
CD
|
A:LYS113
|
4.9
|
65.2
|
1.0
|
OE2
|
A:GLU116
|
4.9
|
84.1
|
1.0
|
|
Chlorine binding site 3 out
of 14 in 8u2s
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Chlorine Binding Sites List in 8u2s
Chlorine binding site 3 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl807
b:75.7
occ:1.00
|
NZ
|
A:LYS99
|
3.5
|
46.4
|
1.0
|
CE
|
A:LYS99
|
4.0
|
45.1
|
1.0
|
CB
|
A:ASN74
|
4.9
|
41.5
|
1.0
|
|
Chlorine binding site 4 out
of 14 in 8u2s
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Chlorine Binding Sites List in 8u2s
Chlorine binding site 4 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl808
b:76.4
occ:1.00
|
OG
|
A:SER558
|
3.6
|
68.4
|
1.0
|
CB
|
A:ASP557
|
3.7
|
50.8
|
1.0
|
N
|
A:SER558
|
3.7
|
55.9
|
1.0
|
NH1
|
A:ARG555
|
4.0
|
77.0
|
1.0
|
CA
|
A:ASP557
|
4.1
|
54.5
|
1.0
|
CB
|
A:SER558
|
4.2
|
59.8
|
1.0
|
C
|
A:ASP557
|
4.4
|
48.6
|
1.0
|
CA
|
A:SER558
|
4.6
|
62.2
|
1.0
|
NH2
|
A:ARG555
|
4.7
|
84.6
|
1.0
|
CZ
|
A:ARG555
|
4.9
|
96.3
|
1.0
|
CG
|
A:ASP557
|
4.9
|
55.2
|
1.0
|
CB
|
A:PRO512
|
5.0
|
69.6
|
1.0
|
|
Chlorine binding site 5 out
of 14 in 8u2s
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Chlorine Binding Sites List in 8u2s
Chlorine binding site 5 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl809
b:83.4
occ:1.00
|
NH1
|
A:ARG65
|
3.7
|
51.4
|
1.0
|
CB
|
A:HIS59
|
4.0
|
63.5
|
1.0
|
CA
|
A:GLY61
|
4.0
|
45.9
|
1.0
|
CD2
|
A:HIS59
|
4.3
|
72.4
|
1.0
|
N
|
A:GLY61
|
4.3
|
54.6
|
1.0
|
CG
|
A:HIS59
|
4.4
|
71.7
|
1.0
|
C
|
A:GLY61
|
4.6
|
58.5
|
1.0
|
N
|
A:SER62
|
4.7
|
52.5
|
1.0
|
CZ
|
A:ARG65
|
4.7
|
79.1
|
1.0
|
NH2
|
A:ARG65
|
4.8
|
69.0
|
1.0
|
|
Chlorine binding site 6 out
of 14 in 8u2s
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Chlorine Binding Sites List in 8u2s
Chlorine binding site 6 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl810
b:78.3
occ:1.00
|
N
|
A:LEU60
|
3.7
|
49.5
|
1.0
|
CA
|
A:HIS59
|
4.0
|
61.0
|
1.0
|
ND1
|
A:HIS59
|
4.0
|
72.4
|
1.0
|
CB
|
A:HIS59
|
4.2
|
63.5
|
1.0
|
C
|
A:HIS59
|
4.4
|
49.9
|
1.0
|
CB
|
A:LEU60
|
4.4
|
47.2
|
1.0
|
CG
|
A:HIS59
|
4.5
|
71.7
|
1.0
|
CA
|
A:LEU60
|
4.7
|
53.0
|
1.0
|
OE1
|
A:GLU45
|
4.8
|
64.7
|
1.0
|
O
|
A:PRO58
|
4.8
|
68.7
|
1.0
|
|
Chlorine binding site 7 out
of 14 in 8u2s
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Chlorine Binding Sites List in 8u2s
Chlorine binding site 7 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl811
b:58.5
occ:1.00
|
NZ
|
A:LYS657
|
3.0
|
70.8
|
1.0
|
CE
|
A:LYS657
|
4.2
|
59.7
|
1.0
|
CD
|
A:LYS657
|
4.4
|
79.5
|
1.0
|
OE1
|
A:GLU596
|
4.9
|
58.9
|
1.0
|
|
Chlorine binding site 8 out
of 14 in 8u2s
Go back to
Chlorine Binding Sites List in 8u2s
Chlorine binding site 8 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl807
b:80.5
occ:1.00
|
NH2
|
B:ARG636
|
3.5
|
58.4
|
1.0
|
NH1
|
B:ARG636
|
4.1
|
67.6
|
1.0
|
NZ
|
B:LYS240
|
4.2
|
108.0
|
1.0
|
CZ
|
B:ARG636
|
4.3
|
64.2
|
1.0
|
NH1
|
B:ARG237
|
4.3
|
99.5
|
1.0
|
CB
|
B:PRO641
|
4.5
|
50.3
|
1.0
|
NH2
|
B:ARG237
|
4.7
|
101.5
|
1.0
|
CZ
|
B:ARG237
|
4.9
|
102.2
|
1.0
|
|
Chlorine binding site 9 out
of 14 in 8u2s
Go back to
Chlorine Binding Sites List in 8u2s
Chlorine binding site 9 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl808
b:73.2
occ:1.00
|
OG
|
B:SER558
|
3.7
|
73.8
|
1.0
|
CB
|
B:ASP557
|
3.8
|
57.6
|
1.0
|
N
|
B:SER558
|
4.0
|
60.8
|
1.0
|
NH1
|
B:ARG555
|
4.3
|
76.0
|
1.0
|
CA
|
B:ASP557
|
4.4
|
52.7
|
1.0
|
CB
|
B:SER558
|
4.5
|
53.1
|
1.0
|
C
|
B:ASP557
|
4.7
|
60.3
|
1.0
|
CA
|
B:SER558
|
4.9
|
63.1
|
1.0
|
CG
|
B:ASP557
|
4.9
|
57.4
|
1.0
|
|
Chlorine binding site 10 out
of 14 in 8u2s
Go back to
Chlorine Binding Sites List in 8u2s
Chlorine binding site 10 out
of 14 in the Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl809
b:61.1
occ:1.00
|
NZ
|
B:LYS113
|
3.2
|
85.7
|
1.0
|
OG
|
B:SER100
|
3.3
|
72.6
|
1.0
|
OE2
|
B:GLU116
|
3.4
|
77.1
|
1.0
|
CB
|
B:SER100
|
4.0
|
56.0
|
1.0
|
CD
|
B:GLU116
|
4.3
|
62.3
|
1.0
|
OE1
|
B:GLU116
|
4.6
|
72.3
|
1.0
|
CE
|
B:LYS113
|
4.6
|
77.0
|
1.0
|
|
Reference:
L.Liu,
S.Lovell,
K.P.Battaile.
Crystal Structure of Acetyl-Coenzyme A Synthetase From Leishmania Infantum (Ethyl Amp Bound, P21 Form) To Be Published.
Page generated: Tue Jul 30 13:00:03 2024
|