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Chlorine in PDB 8u92: Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)

Protein crystallography data

The structure of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form), PDB code: 8u92 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 94.588, 145.738, 216.813, 90, 90, 90
R / Rfree (%) 15.3 / 19.3

Other elements in 8u92:

The structure of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) (pdb code 8u92). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 28 binding sites of Chlorine where determined in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form), PDB code: 8u92:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 28 in 8u92

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Chlorine binding site 1 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:75.7
occ:1.00
O A:PHE113 4.0 32.2 1.0
O A:HOH506 4.5 35.2 1.0
O A:HOH547 4.5 39.9 1.0
N A:PHE115 4.6 29.2 1.0
O A:HOH489 4.6 38.6 1.0
CG1 A:VAL145 4.7 36.9 1.0
OE1 A:GLN151 4.7 45.0 1.0
O A:LYS146 4.8 56.8 1.0
CD2 A:HIS118 4.8 33.7 1.0
NE2 A:GLN151 4.9 43.9 1.0
NE2 A:HIS118 4.9 31.6 1.0
C A:SER114 4.9 34.2 1.0
CD2 A:LEU147 4.9 40.7 1.0
CA A:PHE115 5.0 31.4 1.0

Chlorine binding site 2 out of 28 in 8u92

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Chlorine binding site 2 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:87.7
occ:1.00
NH1 A:ARG97 4.4 36.0 1.0
CZ A:ARG97 4.6 38.1 1.0
NH2 A:ARG97 4.8 36.6 1.0

Chlorine binding site 3 out of 28 in 8u92

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Chlorine binding site 3 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:80.8
occ:1.00
O C:HOH448 4.1 42.0 1.0
OG1 A:THR229 4.3 55.6 1.0
CB C:LEU224 4.3 46.0 1.0
NE2 A:GLN233 4.4 43.6 1.0
OE1 A:GLN233 4.6 53.4 1.0
CD A:GLN233 4.7 50.0 1.0
O C:LEU198 4.8 32.2 1.0
CD1 C:LEU224 4.9 39.8 1.0
C C:LEU224 5.0 49.9 1.0

Chlorine binding site 4 out of 28 in 8u92

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Chlorine binding site 4 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:80.7
occ:1.00
O B:PHE113 3.7 34.9 1.0
O B:HOH521 4.3 41.4 1.0
O B:HOH509 4.5 41.0 1.0
N B:PHE115 4.6 34.1 1.0
C B:SER114 4.9 37.5 1.0
C B:PHE113 4.9 36.4 1.0
NE2 B:HIS118 4.9 34.1 1.0
CA B:SER114 4.9 37.0 1.0
O B:LYS146 5.0 53.3 1.0
CD2 B:HIS118 5.0 37.2 1.0

Chlorine binding site 5 out of 28 in 8u92

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Chlorine binding site 5 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:80.2
occ:1.00
NH1 B:ARG97 4.4 41.6 1.0
CZ B:ARG97 4.6 43.0 1.0
NH2 B:ARG97 4.9 42.3 1.0

Chlorine binding site 6 out of 28 in 8u92

Go back to Chlorine Binding Sites List in 8u92
Chlorine binding site 6 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:74.6
occ:1.00
O D:HOH557 3.1 60.0 1.0
O B:HOH500 4.0 35.8 1.0
OE1 B:GLN233 4.3 41.8 1.0
NE2 B:GLN233 4.6 41.9 1.0
CD B:GLN233 4.7 48.3 1.0
CB D:LEU224 4.8 41.6 1.0
OG1 B:THR229 4.9 44.9 1.0
O D:LEU198 5.0 30.3 1.0

Chlorine binding site 7 out of 28 in 8u92

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Chlorine binding site 7 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl304

b:75.8
occ:1.00
O A:HOH458 3.5 43.1 1.0
NE2 C:GLN233 4.3 42.4 1.0
OE1 C:GLN233 4.5 48.0 1.0
O A:LEU198 4.6 31.9 1.0
CD C:GLN233 4.8 49.2 1.0

Chlorine binding site 8 out of 28 in 8u92

Go back to Chlorine Binding Sites List in 8u92
Chlorine binding site 8 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:78.5
occ:1.00
O C:PHE113 4.0 32.8 1.0
O C:HOH485 4.4 40.9 1.0
N C:PHE115 4.6 33.8 1.0
O C:HOH489 4.6 35.6 1.0
O C:LYS146 4.8 45.7 1.0
O C:HOH523 4.9 48.6 1.0
OE1 C:GLN151 4.9 37.4 1.0
C C:SER114 5.0 37.2 1.0
CD2 C:HIS118 5.0 40.7 1.0

Chlorine binding site 9 out of 28 in 8u92

Go back to Chlorine Binding Sites List in 8u92
Chlorine binding site 9 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl306

b:82.7
occ:1.00
NH1 C:ARG97 4.4 47.0 1.0
CZ C:ARG97 4.5 50.7 1.0
NH2 C:ARG97 4.7 45.3 1.0
O C:HOH461 4.8 33.7 1.0

Chlorine binding site 10 out of 28 in 8u92

Go back to Chlorine Binding Sites List in 8u92
Chlorine binding site 10 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl307

b:82.7
occ:1.00
O C:HOH404 3.9 42.9 1.0
O C:TYR98 4.2 45.5 1.0
CA C:TYR98 4.6 44.2 1.0
C C:TYR98 4.7 46.3 1.0
OE2 C:GLU64 4.8 57.3 1.0

Reference:

S.Lovell, L.Liu, S.Seibold, K.P.Battaile. Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) To Be Published.
Page generated: Sun Jul 13 14:46:02 2025

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