Chlorine in PDB 8u92: Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)

The structure of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form), PDB code: 8u92 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.29 / 2.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	94.588, 145.738, 216.813, 90, 90, 90
R / Rfree (%)	15.3 / 19.3

The structure of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) also contains other interesting chemical elements:

Sodium

(Na)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) (pdb code 8u92). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 28 binding sites of Chlorine where determined in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form), PDB code: 8u92:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:75.7 occ:1.00 O A:PHE113 4.0 32.2 1.0 O A:HOH506 4.5 35.2 1.0 O A:HOH547 4.5 39.9 1.0 N A:PHE115 4.6 29.2 1.0 O A:HOH489 4.6 38.6 1.0 CG1 A:VAL145 4.7 36.9 1.0 OE1 A:GLN151 4.7 45.0 1.0 O A:LYS146 4.8 56.8 1.0 CD2 A:HIS118 4.8 33.7 1.0 NE2 A:GLN151 4.9 43.9 1.0 NE2 A:HIS118 4.9 31.6 1.0 C A:SER114 4.9 34.2 1.0 CD2 A:LEU147 4.9 40.7 1.0 CA A:PHE115 5.0 31.4 1.0

Chlorine binding site 2 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:87.7 occ:1.00 NH1 A:ARG97 4.4 36.0 1.0 CZ A:ARG97 4.6 38.1 1.0 NH2 A:ARG97 4.8 36.6 1.0

Chlorine binding site 3 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl306 b:80.8 occ:1.00 O C:HOH448 4.1 42.0 1.0 OG1 A:THR229 4.3 55.6 1.0 CB C:LEU224 4.3 46.0 1.0 NE2 A:GLN233 4.4 43.6 1.0 OE1 A:GLN233 4.6 53.4 1.0 CD A:GLN233 4.7 50.0 1.0 O C:LEU198 4.8 32.2 1.0 CD1 C:LEU224 4.9 39.8 1.0 C C:LEU224 5.0 49.9 1.0

Chlorine binding site 4 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl304 b:80.7 occ:1.00 O B:PHE113 3.7 34.9 1.0 O B:HOH521 4.3 41.4 1.0 O B:HOH509 4.5 41.0 1.0 N B:PHE115 4.6 34.1 1.0 C B:SER114 4.9 37.5 1.0 C B:PHE113 4.9 36.4 1.0 NE2 B:HIS118 4.9 34.1 1.0 CA B:SER114 4.9 37.0 1.0 O B:LYS146 5.0 53.3 1.0 CD2 B:HIS118 5.0 37.2 1.0

Chlorine binding site 5 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl305 b:80.2 occ:1.00 NH1 B:ARG97 4.4 41.6 1.0 CZ B:ARG97 4.6 43.0 1.0 NH2 B:ARG97 4.9 42.3 1.0

Chlorine binding site 6 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl306 b:74.6 occ:1.00 O D:HOH557 3.1 60.0 1.0 O B:HOH500 4.0 35.8 1.0 OE1 B:GLN233 4.3 41.8 1.0 NE2 B:GLN233 4.6 41.9 1.0 CD B:GLN233 4.7 48.3 1.0 CB D:LEU224 4.8 41.6 1.0 OG1 B:THR229 4.9 44.9 1.0 O D:LEU198 5.0 30.3 1.0

Chlorine binding site 7 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl304 b:75.8 occ:1.00 O A:HOH458 3.5 43.1 1.0 NE2 C:GLN233 4.3 42.4 1.0 OE1 C:GLN233 4.5 48.0 1.0 O A:LEU198 4.6 31.9 1.0 CD C:GLN233 4.8 49.2 1.0

Chlorine binding site 8 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl305 b:78.5 occ:1.00 O C:PHE113 4.0 32.8 1.0 O C:HOH485 4.4 40.9 1.0 N C:PHE115 4.6 33.8 1.0 O C:HOH489 4.6 35.6 1.0 O C:LYS146 4.8 45.7 1.0 O C:HOH523 4.9 48.6 1.0 OE1 C:GLN151 4.9 37.4 1.0 C C:SER114 5.0 37.2 1.0 CD2 C:HIS118 5.0 40.7 1.0

Chlorine binding site 9 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl306 b:82.7 occ:1.00 NH1 C:ARG97 4.4 47.0 1.0 CZ C:ARG97 4.5 50.7 1.0 NH2 C:ARG97 4.7 45.3 1.0 O C:HOH461 4.8 33.7 1.0

Chlorine binding site 10 out of 28 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl307 b:82.7 occ:1.00 O C:HOH404 3.9 42.9 1.0 O C:TYR98 4.2 45.5 1.0 CA C:TYR98 4.6 44.2 1.0 C C:TYR98 4.7 46.3 1.0 OE2 C:GLU64 4.8 57.3 1.0

S.Lovell, L.Liu, S.Seibold, K.P.Battaile. Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form) To Be Published.