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Chlorine in PDB 8udi: Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact

Protein crystallography data

The structure of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact, PDB code: 8udi was solved by J.Propp, M.A.Spies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.54 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.317, 81.969, 113.937, 90, 90, 90
R / Rfree (%) 19 / 23.1

Other elements in 8udi:

The structure of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact (pdb code 8udi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact, PDB code: 8udi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8udi

Go back to Chlorine Binding Sites List in 8udi
Chlorine binding site 1 out of 2 in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:74.1
occ:1.00
OG A:SER152 3.5 59.0 1.0
O A:ILE149 3.9 40.4 1.0
NE1 A:TRP252 3.9 52.2 1.0
CD2 A:LEU186 4.1 42.4 1.0
CE2 A:TRP252 4.3 50.1 1.0
CA A:SER152 4.4 49.9 1.0
CD1 A:TRP252 4.4 51.2 1.0
CB A:SER152 4.5 54.8 1.0
CD1 A:LEU154 4.5 48.7 1.0
CZ2 A:TRP252 4.6 48.4 1.0
N A:SER152 4.8 46.8 1.0
CD2 A:TRP252 4.9 51.6 1.0

Chlorine binding site 2 out of 2 in 8udi

Go back to Chlorine Binding Sites List in 8udi
Chlorine binding site 2 out of 2 in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:60.4
occ:1.00
O B:ILE149 3.9 34.8 1.0
CD1 B:LEU186 3.9 38.8 1.0
OG B:SER152 3.9 57.6 1.0
NE1 B:TRP252 4.0 41.5 1.0
CE2 B:TRP252 4.3 42.1 1.0
CD1 B:LEU154 4.3 42.1 1.0
CA B:SER152 4.4 43.8 1.0
CB B:SER152 4.4 42.4 1.0
CD1 B:TRP252 4.5 38.3 1.0
CZ2 B:TRP252 4.6 38.2 1.0
CG B:GLU251 4.7 60.5 1.0
OE1 B:GLN248 4.8 53.4 1.0
N B:SER152 4.8 42.5 1.0
CD2 B:TRP252 4.9 37.6 1.0
CG B:TRP252 5.0 39.8 1.0

Reference:

J.Propp, M.A.Spies. Structure of H. Pylori Glutamate Racemace with A Crystallographic Artifact To Be Published.
Page generated: Thu Oct 31 18:04:57 2024

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