Chlorine in PDB 8uec: Structure of Trek-1CG*:CAT335A
Protein crystallography data
The structure of Structure of Trek-1CG*:CAT335A, PDB code: 8uec
was solved by
A.Mondal,
H.Lee,
D.L.Minor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.35 /
3.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.213,
120.568,
128.613,
90,
90,
90
|
R / Rfree (%)
|
27.3 /
29.3
|
Other elements in 8uec:
The structure of Structure of Trek-1CG*:CAT335A also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Trek-1CG*:CAT335A
(pdb code 8uec). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of Trek-1CG*:CAT335A, PDB code: 8uec:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 8uec
Go back to
Chlorine Binding Sites List in 8uec
Chlorine binding site 1 out
of 4 in the Structure of Trek-1CG*:CAT335A
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:104.7
occ:1.00
|
CL1
|
A:WUZ405
|
0.0
|
104.7
|
1.0
|
C11
|
A:WUZ405
|
1.8
|
120.5
|
1.0
|
C10
|
A:WUZ405
|
2.8
|
110.0
|
1.0
|
C12
|
A:WUZ405
|
2.8
|
114.2
|
1.0
|
C
|
A:GLY137
|
4.0
|
99.9
|
1.0
|
OG1
|
A:THR141
|
4.0
|
74.3
|
1.0
|
C9
|
A:WUZ405
|
4.0
|
96.8
|
1.0
|
C13
|
A:WUZ405
|
4.0
|
98.5
|
1.0
|
CG2
|
A:ILE278
|
4.1
|
102.5
|
1.0
|
O
|
A:GLY137
|
4.1
|
98.4
|
1.0
|
CG1
|
A:ILE278
|
4.2
|
89.3
|
1.0
|
CG2
|
A:THR141
|
4.3
|
100.0
|
1.0
|
N
|
A:THR138
|
4.3
|
101.9
|
1.0
|
CD1
|
A:ILE143
|
4.3
|
67.9
|
1.0
|
CA
|
A:GLY137
|
4.3
|
105.1
|
1.0
|
CZ3
|
A:TRP275
|
4.3
|
108.4
|
1.0
|
CH2
|
A:TRP275
|
4.4
|
112.8
|
1.0
|
CD1
|
A:ILE278
|
4.5
|
93.3
|
1.0
|
C8
|
A:WUZ405
|
4.5
|
106.9
|
1.0
|
CA
|
A:THR138
|
4.7
|
88.2
|
1.0
|
CB
|
A:ILE278
|
4.7
|
92.2
|
1.0
|
CB
|
A:THR141
|
4.7
|
89.3
|
1.0
|
CE3
|
A:TRP275
|
4.8
|
116.1
|
1.0
|
O
|
A:PHE134
|
4.8
|
83.1
|
1.0
|
CZ2
|
A:TRP275
|
4.9
|
112.7
|
1.0
|
CG2
|
A:THR138
|
4.9
|
79.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 8uec
Go back to
Chlorine Binding Sites List in 8uec
Chlorine binding site 2 out
of 4 in the Structure of Trek-1CG*:CAT335A
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:95.8
occ:1.00
|
CL2
|
A:WUZ405
|
0.0
|
95.8
|
1.0
|
C13
|
A:WUZ405
|
1.8
|
98.5
|
1.0
|
C12
|
A:WUZ405
|
2.8
|
114.2
|
1.0
|
C8
|
A:WUZ405
|
2.8
|
106.9
|
1.0
|
C14
|
A:WUZ405
|
3.1
|
109.2
|
1.0
|
N1
|
A:WUZ405
|
3.2
|
88.7
|
1.0
|
O
|
A:ALA259
|
3.5
|
102.0
|
1.0
|
CB
|
A:ALA259
|
3.9
|
92.5
|
1.0
|
N
|
A:ALA259
|
4.0
|
91.3
|
1.0
|
C11
|
A:WUZ405
|
4.0
|
120.5
|
1.0
|
C9
|
A:WUZ405
|
4.1
|
96.8
|
1.0
|
CZ
|
A:PHE244
|
4.1
|
80.4
|
1.0
|
CG1
|
A:VAL274
|
4.2
|
109.5
|
1.0
|
CE2
|
A:PHE145
|
4.2
|
80.2
|
1.0
|
CA
|
A:ALA259
|
4.3
|
97.8
|
1.0
|
C
|
A:ALA259
|
4.3
|
110.6
|
1.0
|
C7
|
A:WUZ405
|
4.4
|
95.6
|
1.0
|
CE1
|
A:PHE134
|
4.4
|
87.3
|
1.0
|
C10
|
A:WUZ405
|
4.6
|
110.0
|
1.0
|
CG1
|
A:VAL258
|
4.6
|
92.7
|
1.0
|
CE1
|
A:PHE244
|
4.7
|
74.3
|
1.0
|
CZ
|
A:PHE145
|
4.7
|
74.1
|
1.0
|
CD1
|
A:PHE134
|
4.9
|
96.5
|
1.0
|
C4
|
A:WUZ405
|
4.9
|
89.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 8uec
Go back to
Chlorine Binding Sites List in 8uec
Chlorine binding site 3 out
of 4 in the Structure of Trek-1CG*:CAT335A
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl405
b:99.2
occ:1.00
|
CL1
|
B:WUZ405
|
0.0
|
99.2
|
1.0
|
C11
|
B:WUZ405
|
1.8
|
95.0
|
1.0
|
C12
|
B:WUZ405
|
2.8
|
91.8
|
1.0
|
C10
|
B:WUZ405
|
2.8
|
101.0
|
1.0
|
C
|
B:GLY137
|
3.7
|
90.8
|
1.0
|
O
|
B:GLY137
|
3.8
|
86.3
|
1.0
|
N
|
B:THR138
|
4.0
|
90.1
|
1.0
|
C13
|
B:WUZ405
|
4.0
|
107.7
|
1.0
|
C9
|
B:WUZ405
|
4.0
|
102.9
|
1.0
|
OG1
|
B:THR141
|
4.1
|
85.2
|
1.0
|
CA
|
B:GLY137
|
4.2
|
90.3
|
1.0
|
CG2
|
B:ILE278
|
4.2
|
90.0
|
1.0
|
CA
|
B:THR138
|
4.3
|
84.8
|
1.0
|
CD1
|
B:ILE143
|
4.3
|
87.2
|
1.0
|
CG2
|
B:THR141
|
4.4
|
85.0
|
1.0
|
CG1
|
B:ILE278
|
4.4
|
93.6
|
1.0
|
CH2
|
B:TRP275
|
4.4
|
95.8
|
1.0
|
CG2
|
B:THR138
|
4.4
|
87.9
|
1.0
|
CZ3
|
B:TRP275
|
4.5
|
91.8
|
1.0
|
C8
|
B:WUZ405
|
4.6
|
108.3
|
1.0
|
CD1
|
B:ILE278
|
4.6
|
92.6
|
1.0
|
O
|
B:PHE134
|
4.7
|
97.7
|
1.0
|
CB
|
B:THR141
|
4.8
|
81.2
|
1.0
|
CZ2
|
B:TRP275
|
4.9
|
93.6
|
1.0
|
CB
|
B:ILE278
|
4.9
|
88.4
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 8uec
Go back to
Chlorine Binding Sites List in 8uec
Chlorine binding site 4 out
of 4 in the Structure of Trek-1CG*:CAT335A
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl405
b:112.5
occ:1.00
|
CL2
|
B:WUZ405
|
0.0
|
112.5
|
1.0
|
C13
|
B:WUZ405
|
1.8
|
107.7
|
1.0
|
C12
|
B:WUZ405
|
2.7
|
91.8
|
1.0
|
C8
|
B:WUZ405
|
2.8
|
108.3
|
1.0
|
C14
|
B:WUZ405
|
3.1
|
107.0
|
1.0
|
N1
|
B:WUZ405
|
3.2
|
111.3
|
1.0
|
O
|
B:ALA259
|
3.4
|
113.3
|
1.0
|
CE2
|
B:PHE145
|
3.6
|
105.4
|
1.0
|
CB
|
B:ALA259
|
3.8
|
111.1
|
1.0
|
N
|
B:ALA259
|
3.8
|
116.4
|
1.0
|
CZ
|
B:PHE244
|
3.9
|
109.0
|
1.0
|
C11
|
B:WUZ405
|
4.0
|
95.0
|
1.0
|
C9
|
B:WUZ405
|
4.1
|
102.9
|
1.0
|
CZ
|
B:PHE145
|
4.1
|
100.2
|
1.0
|
CA
|
B:ALA259
|
4.2
|
116.2
|
1.0
|
C
|
B:ALA259
|
4.2
|
116.9
|
1.0
|
CE1
|
B:PHE134
|
4.2
|
105.4
|
1.0
|
CG1
|
B:VAL258
|
4.4
|
116.7
|
1.0
|
CG1
|
B:VAL274
|
4.4
|
104.1
|
1.0
|
C7
|
B:WUZ405
|
4.5
|
116.0
|
1.0
|
CE1
|
B:PHE244
|
4.5
|
106.8
|
1.0
|
C10
|
B:WUZ405
|
4.6
|
101.0
|
1.0
|
CD1
|
B:PHE134
|
4.7
|
110.3
|
1.0
|
CD2
|
B:PHE145
|
4.7
|
105.9
|
1.0
|
C
|
B:VAL258
|
4.8
|
114.1
|
1.0
|
C4
|
B:WUZ405
|
5.0
|
118.4
|
1.0
|
CE2
|
B:PHE244
|
5.0
|
109.8
|
1.0
|
|
Reference:
A.Mondal,
H.Lee,
D.L.Minor.
Structure of Trek-1(S131C Mutant) with ML335 To Be Published.
Page generated: Tue Jul 30 13:12:50 2024
|