Chlorine in PDB 8utc: Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant)

The structure of Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant), PDB code: 8utc was solved by N.Oltean, S.Nyovanie, A.Hashem, L.Patskovska, Y.Patskovsky, M.Krogsgaard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.23 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.067, 84.737, 154.189, 90, 90, 90
R / Rfree (%)	18.3 / 24

The binding sites of Chlorine atom in the Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant) (pdb code 8utc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant), PDB code: 8utc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:69.5 occ:1.00 N A:GLU232 3.1 43.8 1.0 CB A:GLU232 3.5 60.7 1.0 NE2 B:GLN8 3.6 33.2 1.0 CA A:VAL231 3.8 37.0 1.0 O B:HOH208 3.9 44.6 1.0 CD B:GLN8 3.9 36.6 1.0 CA A:GLU232 3.9 41.8 1.0 O B:HOH255 3.9 38.3 1.0 C A:VAL231 4.0 36.7 1.0 CB A:VAL231 4.0 41.4 1.0 CB B:LYS6 4.1 41.5 1.0 CG B:GLN8 4.1 34.9 1.0 CD B:LYS6 4.4 88.8 1.0 CG1 A:VAL231 4.5 44.9 1.0 OE1 B:GLN8 4.6 27.6 1.0 CG B:LYS6 4.7 41.4 1.0 O A:GLU232 4.7 42.4 1.0 CG A:GLU232 4.7 76.8 1.0 C A:GLU232 4.9 45.1 1.0 OE2 A:GLU232 4.9 63.9 1.0

Chlorine binding site 2 out of 3 in the Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl101 b:59.2 occ:1.00 N B:GLY43 3.1 46.0 1.0 O B:HOH262 3.3 56.5 1.0 N B:ASN42 3.5 42.7 1.0 O B:GLU77 3.6 39.8 1.0 CB B:ALA79 3.6 35.2 1.0 N B:ALA79 3.7 35.3 1.0 C B:TYR78 3.8 35.3 1.0 O B:LEU40 3.8 42.2 1.0 O B:HOH266 3.8 53.0 1.0 CB B:LEU40 3.8 47.9 1.0 C B:GLU77 3.8 37.5 1.0 CA B:ASN42 3.8 45.8 1.0 CA B:GLY43 3.9 52.6 1.0 CA B:TYR78 3.9 26.8 1.0 C B:ASN42 3.9 44.3 1.0 N B:TYR78 3.9 33.0 1.0 C B:LEU40 4.0 39.2 1.0 C B:LYS41 4.2 40.7 1.0 O B:TYR78 4.3 39.6 1.0 CA B:ALA79 4.3 38.9 1.0 CB B:GLU77 4.5 53.2 1.0 N B:LYS41 4.5 45.0 1.0 CA B:LYS41 4.5 43.2 1.0 CA B:LEU40 4.6 41.0 1.0 CA B:GLU77 4.8 48.0 1.0 CD1 B:LEU40 5.0 39.9 1.0

Chlorine binding site 3 out of 3 in the Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl102 b:65.8 occ:1.00 N B:ASP59 3.2 38.6 1.0 CG B:ASP59 3.3 42.4 1.0 CB B:ASP59 3.4 45.5 1.0 OD1 B:ASP59 3.6 39.2 1.0 CB B:SER57 3.6 41.9 1.0 OD2 B:ASP59 3.6 51.6 1.0 N B:LYS58 3.7 35.2 1.0 CB B:LYS58 3.9 58.3 1.0 CA B:ASP59 3.9 40.2 1.0 O B:HOH263 4.0 40.2 1.0 C B:LYS58 4.0 36.2 1.0 CA B:LYS58 4.0 42.3 1.0 CG B:LYS58 4.3 70.4 1.0 C B:SER57 4.3 30.3 1.0 OG B:SER57 4.6 32.1 1.0 CA B:SER57 4.6 36.8 1.0

N.Oltean, S.Nyovanie, A.Hashem, L.Patskovska, Y.Patskovsky, M.Krogsgaard. Human Leukocyte Antigen B*07:02 in Complex with Sars-COV2 Epitope N105-113 (Y111F Mutant) To Be Published.