Chlorine in PDB 8v4g: X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp

Protein crystallography data

The structure of X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp, PDB code: 8v4g was solved by M.E.Schumann, J.B.Thoden, H.M.Holden, F.M.Raushel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.05 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.354, 102.44, 141.695, 90, 90, 90
R / Rfree (%) 19.1 / 25.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp (pdb code 8v4g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp, PDB code: 8v4g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8v4g

Go back to Chlorine Binding Sites List in 8v4g
Chlorine binding site 1 out of 2 in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:47.3
occ:1.00
N A:GLU79 3.4 29.6 1.0
N A:ASP80 3.6 31.9 1.0
CG A:LYS83 4.0 57.6 1.0
CB A:ASP80 4.1 33.5 1.0
CA A:GLU79 4.1 31.4 1.0
CB A:GLU79 4.1 33.9 1.0
CA A:TYR78 4.2 32.7 1.0
CB A:LYS83 4.2 55.8 1.0
C A:GLU79 4.2 30.4 1.0
CD1 A:TYR78 4.3 38.6 1.0
CB A:TYR78 4.3 33.3 1.0
C A:TYR78 4.3 31.0 1.0
CA A:ASP80 4.4 33.5 1.0
O A:ASP80 4.5 32.4 1.0
O A:HOH616 4.6 44.9 1.0
CG A:TYR78 4.7 36.1 1.0
C A:ASP80 4.9 30.7 1.0

Chlorine binding site 2 out of 2 in 8v4g

Go back to Chlorine Binding Sites List in 8v4g
Chlorine binding site 2 out of 2 in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp and Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:27.6
occ:1.00
NZ A:LYS184 3.2 23.5 1.0
CA B:ASN106 3.3 18.3 1.0
N B:ILE108 3.3 15.3 1.0
CB B:ILE108 3.3 18.5 0.5
CB B:ILE108 3.3 17.9 0.5
N B:ASP109 3.4 16.4 1.0
C B:ASN106 3.4 15.7 1.0
CA B:ILE108 3.7 16.3 0.5
CA B:ILE108 3.7 16.1 0.5
CB B:ASN106 3.7 21.8 1.0
CG B:ASP109 3.8 23.9 1.0
OD1 B:ASP109 3.8 25.0 1.0
N B:PRO107 3.8 16.0 1.0
O B:ASN106 3.8 14.1 1.0
ND2 B:ASN106 3.8 28.5 1.0
CG1 B:ILE108 3.9 18.3 0.5
CD1 B:ILE108 3.9 17.8 0.5
CD A:LYS184 4.0 23.6 1.0
CD B:PRO107 4.0 17.2 1.0
CG1 B:ILE108 4.0 19.6 0.5
C B:ILE108 4.0 15.8 1.0
OD2 B:ASP109 4.1 33.1 1.0
CB B:ASP109 4.1 18.2 1.0
CE A:LYS184 4.2 23.5 1.0
CG B:ASN106 4.2 24.2 1.0
C B:PRO107 4.3 14.6 1.0
CA B:ASP109 4.3 14.3 1.0
CG2 B:ILE108 4.4 18.2 0.5
O B:GLU105 4.4 16.5 1.0
CG2 B:ILE108 4.5 17.9 0.5
N B:ASN106 4.6 20.0 1.0
CA B:PRO107 4.7 15.1 1.0
OH A:TYR185 4.7 32.5 1.0
CG B:PRO107 4.7 15.6 1.0
C B:GLU105 4.9 20.0 1.0

Reference:

M.K.Ghosh, J.B.Thoden, M.E.Schumann, H.M.Holden, F.M.Raushel. Biosynthesis of Cdp-D-Glucitol For the Capsular Polysaccharides of Campylobacter Jejuni To Be Published.
Page generated: Tue Jul 30 13:30:07 2024

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