Chlorine in PDB 8w6m: Native Strucutre of Ferritin From Ureaplasma Diversum

The structure of Native Strucutre of Ferritin From Ureaplasma Diversum, PDB code: 8w6m was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.63 / 2.50
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	179.938, 179.938, 179.938, 90, 90, 90
R / Rfree (%)	18.6 / 24.6

The structure of Native Strucutre of Ferritin From Ureaplasma Diversum also contains other interesting chemical elements:

Iron	(Fe)	7 atoms
Magnesium	(Mg)	1 atom

The binding sites of Chlorine atom in the Native Strucutre of Ferritin From Ureaplasma Diversum (pdb code 8w6m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Native Strucutre of Ferritin From Ureaplasma Diversum, PDB code: 8w6m:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Native Strucutre of Ferritin From Ureaplasma Diversum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Native Strucutre of Ferritin From Ureaplasma Diversum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl209 b:35.1 occ:1.00 NZ A:LYS159 3.1 24.3 1.0 N A:ALA95 3.4 24.3 1.0 CD1 A:PHE45 3.6 33.3 1.0 CB A:ASP94 3.7 21.4 1.0 CG A:PHE45 3.8 29.1 1.0 CE A:LYS159 3.8 25.9 1.0 CB A:PHE45 3.9 24.8 1.0 CA A:ASP94 3.9 35.2 1.0 CB A:ALA95 3.9 25.9 1.0 O A:HOH382 4.1 30.6 1.0 C A:ASP94 4.1 28.8 1.0 CA A:ALA95 4.3 25.8 1.0 CE1 A:PHE45 4.3 28.4 1.0 O A:HOH391 4.4 44.7 1.0 CA A:PHE45 4.4 25.8 1.0 O A:PHE45 4.6 26.8 1.0 CD2 A:PHE45 4.7 20.1 1.0 CG A:ASP94 4.9 30.2 1.0

Chlorine binding site 2 out of 5 in the Native Strucutre of Ferritin From Ureaplasma Diversum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Native Strucutre of Ferritin From Ureaplasma Diversum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl210 b:45.7 occ:1.00 NE A:ARG137 3.2 32.7 1.0 CD1 A:TRP134 3.7 24.8 1.0 CD A:ARG137 3.9 27.1 1.0 CA A:TRP134 3.9 25.2 1.0 CZ A:ARG137 4.2 31.6 1.0 CG A:TRP134 4.3 25.7 1.0 CB A:TRP134 4.3 15.7 1.0 NH2 A:ARG137 4.3 27.6 1.0 N A:TRP134 4.5 18.4 1.0 CB A:ARG137 4.7 28.1 1.0 NE1 A:TRP134 4.7 26.2 1.0 O A:GLN133 4.9 25.0 1.0 CG A:ARG137 4.9 23.6 1.0 C A:GLN133 5.0 19.3 1.0 O A:TRP134 5.0 24.2 1.0 C A:TRP134 5.0 24.8 1.0

Chlorine binding site 3 out of 5 in the Native Strucutre of Ferritin From Ureaplasma Diversum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Native Strucutre of Ferritin From Ureaplasma Diversum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl211 b:45.7 occ:1.00 NZ A:LYS89 3.2 34.5 1.0 O A:HOH421 3.6 29.9 0.5 CE A:LYS89 3.6 22.7 1.0 CD A:LYS89 3.8 37.0 1.0 CB A:ALA87 4.3 30.9 1.0 CG A:LYS89 4.9 30.1 1.0

Chlorine binding site 4 out of 5 in the Native Strucutre of Ferritin From Ureaplasma Diversum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Native Strucutre of Ferritin From Ureaplasma Diversum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl212 b:40.2 occ:1.00 O A:HOH362 2.9 20.0 1.0 CA A:LEU119 3.6 24.6 1.0 CG A:LYS118 3.8 31.9 1.0 N A:LEU119 3.9 29.7 1.0 O A:LYS118 4.0 30.4 1.0 C A:LYS118 4.0 28.1 1.0 CB A:ALA122 4.1 23.9 1.0 CB A:LEU119 4.1 24.2 1.0 CD1 A:LEU119 4.1 26.0 1.0 CD A:LYS118 4.2 33.6 1.0 CE A:LYS118 4.4 33.2 1.0 CB A:LYS118 4.5 26.9 1.0 CG A:LEU119 4.8 26.0 1.0 C A:LEU119 4.9 28.8 1.0 CA A:LYS118 4.9 30.9 1.0 O A:ALA115 4.9 30.4 1.0

Chlorine binding site 5 out of 5 in the Native Strucutre of Ferritin From Ureaplasma Diversum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Native Strucutre of Ferritin From Ureaplasma Diversum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl213 b:40.5 occ:1.00 O A:HOH402 3.0 36.6 1.0 N A:LYS89 3.2 36.5 1.0 N A:SER90 3.4 33.4 1.0 O A:SER90 3.8 35.1 1.0 O A:ALA87 3.8 30.4 1.0 CA A:VAL88 4.0 36.5 1.0 CA A:LYS89 4.0 33.5 1.0 C A:VAL88 4.0 41.6 1.0 C A:LYS89 4.1 36.8 1.0 CB A:LYS89 4.2 24.8 1.0 CA A:SER90 4.2 38.4 1.0 CG A:LYS89 4.4 30.1 1.0 CB A:SER90 4.4 35.0 1.0 C A:SER90 4.5 39.6 1.0 C A:ALA87 4.7 33.5 1.0 CG1 A:VAL88 4.8 20.4 1.0 N A:VAL88 4.8 28.0 1.0 CB A:VAL88 4.9 36.0 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830