Chlorine in PDB 8whs: Spike Trimer of Ba.2.86 in Complex with One HACE2

The structure of Spike Trimer of Ba.2.86 in Complex with One HACE2 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Chlorine atom in the Spike Trimer of Ba.2.86 in Complex with One HACE2 (pdb code 8whs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Spike Trimer of Ba.2.86 in Complex with One HACE2, PDB code: 8whs:

Chlorine binding site 1 out of 1 in the Spike Trimer of Ba.2.86 in Complex with One HACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Spike Trimer of Ba.2.86 in Complex with One HACE2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl902 b:96.7 occ:1.00 NH2 D:ARG169 2.5 130.8 1.0 CB D:TRP271 3.4 125.1 1.0 CZ D:ARG169 3.7 132.9 1.0 CD1 D:TRP271 3.8 125.1 1.0 CZ D:PHE452 4.0 128.1 1.0 CG D:TRP271 4.0 126.1 1.0 CA D:TRP271 4.0 124.8 1.0 O D:TRP271 4.1 124.6 1.0 NE D:ARG169 4.3 133.0 1.0 C D:TRP271 4.6 124.4 1.0 O D:ASP499 4.7 122.4 1.0 NH1 D:ARG169 4.7 132.5 1.0 CE1 D:PHE452 4.8 128.6 1.0 CE2 D:PHE452 4.8 128.9 1.0 NZ D:LYS481 5.0 128.6 1.0

P.Liu, C.Yue, B.Meng, T.Xiao, S.Yang, S.Liu, F.Jian, Q.Zhu, Y.Yu, Y.Ren, P.Wang, Y.Li, J.Wang, X.Mao, F.Shao, Y.Wang, R.K.Gupta, Y.Cao, X.Wang. Spike N354 Glycosylation Augments Sars-Cov-2 Fitness For Human Adaptation Through Structural Plasticity Natl Sci Rev 2024.
ISSN: ESSN 2053-714X
DOI: 10.1093/NSR/NWAE206