Chlorine in PDB 8x0y: Crystal Structure of Jm-1A in Complex with Sars-Cov-2 Rbd

The structure of Crystal Structure of Jm-1A in Complex with Sars-Cov-2 Rbd, PDB code: 8x0y was solved by A.Mohapatra, X.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 1.94
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	148.359, 107.03, 87.34, 90, 100.75, 90
R / Rfree (%)	19.4 / 22.3

The binding sites of Chlorine atom in the Crystal Structure of Jm-1A in Complex with Sars-Cov-2 Rbd (pdb code 8x0y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Jm-1A in Complex with Sars-Cov-2 Rbd, PDB code: 8x0y:

Chlorine binding site 1 out of 1 in the Crystal Structure of Jm-1A in Complex with Sars-Cov-2 Rbd


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Jm-1A in Complex with Sars-Cov-2 Rbd within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:56.8 occ:1.00 O B:HOH882 2.1 57.1 1.0 NH1 B:ARG355 2.9 27.7 1.0 O B:HOH770 3.5 45.5 1.0 CD2 B:PHE464 3.5 27.4 1.0 CG B:PHE464 3.7 24.4 1.0 NH2 B:ARG355 3.7 23.2 1.0 CZ B:ARG355 3.7 29.3 1.0 CB B:PHE464 3.9 27.1 1.0 CE2 B:PHE464 4.1 25.2 1.0 CE2 B:TYR396 4.3 46.4 1.0 O B:HOH844 4.4 59.6 1.0 CD2 B:TYR396 4.5 38.3 1.0 CD1 B:PHE464 4.5 21.6 1.0 O B:HOH863 4.6 61.3 1.0 CZ B:TYR396 4.8 46.2 1.0 CZ B:PHE464 4.8 24.4 1.0 O B:HOH823 4.8 37.6 1.0 CE1 B:PHE464 5.0 23.7 1.0

X.Chen, A.Mohapatra, H.T.V.Nguyen, L.Schimanski, T.K.Tan, P.Rijal, C.P.Chen, S.H.Cheng, W.H.Lee, Y.C.Chou, A.R.Townsend, C.Ma, K.Y.Huang. The Presence of Broadly Neutralizing Anti-Sars-Cov-2 Rbd Antibodies Elicited By Primary Series and Booster Dose of Covid-19 Vaccine Plos Pathog. 2024.
ISSN: ESSN 1553-7374
DOI: 10.1371/JOURNAL.PPAT.1012246