Chlorine in PDB 8x5p: Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide

The structure of Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide, PDB code: 8x5p was solved by Y.Zhu, X.Yang, F.Sun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.61 / 2.51
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	73.373, 42.344, 169.294, 90, 98.22, 90
R / Rfree (%)	22.9 / 28.4

The binding sites of Chlorine atom in the Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide (pdb code 8x5p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide, PDB code: 8x5p:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:28.7 occ:1.00 O B:HOH209 2.1 37.4 1.0 NE2 A:GLN11 3.3 20.4 1.0 CB A:GLN11 3.4 21.0 1.0 NE2 C:GLN11 3.6 20.5 1.0 CG A:GLN11 3.6 23.6 1.0 CA A:GLN11 3.9 24.0 1.0 NE2 B:GLN11 3.9 25.3 1.0 CD A:GLN11 3.9 28.2 1.0 CB B:GLN11 4.1 22.3 1.0 CB C:GLN11 4.1 28.3 1.0 CD1 B:ILE14 4.2 23.8 1.0 CD1 A:ILE14 4.3 21.1 1.0 CG C:GLN11 4.3 28.9 1.0 CA B:GLN11 4.4 23.4 1.0 CD C:GLN11 4.5 27.5 1.0 CG B:GLN11 4.5 23.4 1.0 CA C:GLN11 4.6 25.6 1.0 N A:GLN11 4.6 21.5 1.0 CD1 C:ILE14 4.7 16.9 1.0 CD B:GLN11 4.7 31.5 1.0 N B:GLN11 4.9 22.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mjhkur-Cov Spike HR1 in Complex with EK1 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl201 b:11.4 occ:1.00 NE2 D:GLN11 3.3 15.4 1.0 CG F:GLN11 3.3 21.5 1.0 NE2 F:GLN11 3.3 18.4 1.0 NE2 E:GLN11 3.4 16.2 1.0 CG E:GLN11 3.6 23.1 1.0 CG D:GLN11 3.7 23.7 1.0 CD F:GLN11 3.8 13.9 1.0 CB F:GLN11 4.0 19.8 1.0 CD D:GLN11 4.0 18.6 1.0 CB E:GLN11 4.0 18.9 1.0 CD E:GLN11 4.0 15.1 1.0 CB D:GLN11 4.1 19.8 1.0 CA F:GLN11 4.3 19.6 1.0 CD1 F:ILE14 4.4 18.1 1.0 CA E:GLN11 4.4 16.5 1.0 CA D:GLN11 4.5 18.0 1.0 CD1 D:ILE14 4.5 13.3 1.0 CD1 E:ILE14 4.5 17.3 1.0 N F:GLN11 4.9 19.2 1.0 N E:GLN11 5.0 18.0 1.0

Y.Zhu, F.Sun, L.Lu. Fusion Mechanism of Mjhkur-Cov Spike and Its Entry Inhibitor To Be Published.