Chlorine in PDB 8ybg: Crystal Structure of Lysozyme By Serial Synchrotron Crystallography

All present enzymatic activity of Crystal Structure of Lysozyme By Serial Synchrotron Crystallography:
3.2.1.17;

The structure of Crystal Structure of Lysozyme By Serial Synchrotron Crystallography, PDB code: 8ybg was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.51 / 1.55
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.5, 78.5, 38.3, 90, 90, 90
R / Rfree (%)	18.2 / 22

The structure of Crystal Structure of Lysozyme By Serial Synchrotron Crystallography also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme By Serial Synchrotron Crystallography (pdb code 8ybg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme By Serial Synchrotron Crystallography, PDB code: 8ybg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Lysozyme By Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme By Serial Synchrotron Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:32.1 occ:1.00 OH A:TYR41 2.9 23.6 1.0 O A:HOH345 3.4 29.9 1.0 CZ A:TYR41 3.7 21.2 1.0 CE2 A:TYR41 3.7 20.9 1.0 CA A:GLY122 4.0 25.7 1.0 N A:GLY122 4.6 24.9 1.0 O A:ARG39 4.6 28.0 1.0 O A:HOH313 4.7 33.0 1.0 CE1 A:TYR41 4.9 21.3 1.0 CD2 A:TYR41 4.9 23.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Lysozyme By Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme By Serial Synchrotron Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:38.2 occ:1.00 N A:GLY44 3.0 22.7 1.0 OG A:SER42 3.1 28.8 1.0 CA A:GLY44 3.4 21.9 1.0 CB A:SER42 3.5 27.6 1.0 CA A:GLN139 3.6 34.1 1.0 CD1 A:ILE142 3.7 35.7 1.0 CB A:GLN139 3.9 34.7 1.0 N A:GLN139 4.0 32.2 1.0 N A:LEU43 4.1 25.8 1.0 CG A:GLN139 4.1 44.7 1.0 C A:LEU43 4.2 22.1 1.0 CG1 A:ILE142 4.3 31.4 1.0 C A:SER42 4.3 26.2 1.0 O A:VAL138 4.3 28.3 1.0 C A:VAL138 4.3 30.9 1.0 CG2 A:VAL138 4.5 28.1 1.0 CA A:SER42 4.6 27.3 1.0 C A:GLY44 4.6 22.7 1.0 CA A:LEU43 4.6 25.8 1.0 CD A:GLN139 4.7 52.7 1.0 O A:SER42 4.7 23.6 1.0 N A:ASN45 4.7 20.6 1.0 OE1 A:GLN139 4.7 56.8 1.0 C A:GLN139 4.8 32.2 1.0 CB A:LEU43 4.9 27.1 1.0 O A:GLN139 5.0 32.4 1.0

K.H.Nam, K.H.Nam. N/A N/A.