Chlorine in PDB 8ylh: Crystal Structure of Pectobacterium Atrosepticum Pecs

The structure of Crystal Structure of Pectobacterium Atrosepticum Pecs, PDB code: 8ylh was solved by W.S.Song, S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.72 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.35, 76.367, 78.651, 90, 90, 90
R / Rfree (%)	20.1 / 21.8

The binding sites of Chlorine atom in the Crystal Structure of Pectobacterium Atrosepticum Pecs (pdb code 8ylh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Pectobacterium Atrosepticum Pecs, PDB code: 8ylh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Pectobacterium Atrosepticum Pecs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pectobacterium Atrosepticum Pecs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl300 b:14.5 occ:1.00 O A:HOH431 3.1 15.0 1.0 NE1 B:TRP24 3.1 12.7 1.0 O A:HOH455 3.3 10.6 1.0 NE A:ARG75 3.3 11.5 1.0 NH2 A:ARG75 3.4 12.2 1.0 CZ A:ARG75 3.8 11.6 1.0 CE2 B:TRP24 3.9 13.0 1.0 CZ2 B:TRP24 4.0 12.5 1.0 CG2 B:ILE20 4.1 13.5 1.0 SD B:MET36 4.1 17.5 1.0 CB A:ALA71 4.2 11.3 1.0 CD1 B:TRP24 4.2 13.4 1.0 CE A:MET92 4.3 15.6 1.0 CE B:MET36 4.3 19.7 1.0 CD A:ARG75 4.4 13.0 1.0 O B:HOH475 4.5 15.7 1.0 CB A:MET92 4.5 13.7 1.0 OD1 A:ASP68 4.8 10.4 1.0 CE1 A:PHE67 4.9 11.2 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Pectobacterium Atrosepticum Pecs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Pectobacterium Atrosepticum Pecs within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl300 b:13.9 occ:1.00 O B:HOH415 3.1 15.8 1.0 NE1 A:TRP24 3.2 11.5 1.0 O B:HOH457 3.2 11.8 1.0 NE B:ARG75 3.3 11.4 1.0 NH2 B:ARG75 3.4 13.7 1.0 CZ B:ARG75 3.8 11.3 1.0 CE2 A:TRP24 3.9 10.9 1.0 CZ2 A:TRP24 3.9 12.3 1.0 CG2 A:ILE20 4.1 12.6 1.0 CB B:ALA71 4.1 10.9 1.0 SD A:MET36 4.2 16.9 1.0 CE B:MET92 4.3 19.9 1.0 CD1 A:TRP24 4.3 11.0 1.0 CE A:MET36 4.4 21.4 1.0 CD B:ARG75 4.4 12.3 1.0 O A:HOH466 4.5 17.6 1.0 CE1 B:PHE67 4.8 12.6 1.0 CB B:MET92 4.8 15.9 1.0 OD1 B:ASP68 5.0 12.2 1.0

W.S.Song, D.U.Ki, H.Y.Cho, O.H.Kwon, H.Cho, S.I.Yoon. Structural Basis of Transcriptional Regulation By Urtr in Response to Uric Acid. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 39484741
DOI: 10.1093/NAR/GKAE922