Chlorine in PDB 9bl8: Mit (L7C/A43C) Domain of VPS4P

The structure of Mit (L7C/A43C) Domain of VPS4P, PDB code: 9bl8 was solved by H.J.Wienkers, H.Han, F.G.Whitby, C.P.Hill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.07 / 1.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	20.699, 42.939, 96.463, 90, 90, 90
R / Rfree (%)	13.6 / 18

The binding sites of Chlorine atom in the Mit (L7C/A43C) Domain of VPS4P (pdb code 9bl8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Mit (L7C/A43C) Domain of VPS4P, PDB code: 9bl8:

Chlorine binding site 1 out of 1 in the Mit (L7C/A43C) Domain of VPS4P


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mit (L7C/A43C) Domain of VPS4P within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl101 b:12.9 occ:1.00 HZ3 A:LYS17 2.3 18.3 1.0 HD22 A:ASN36 2.5 12.5 1.0 HA A:ALA33 2.9 8.9 1.0 HG21 A:THR32 3.1 15.0 1.0 NZ A:LYS17 3.2 15.2 1.0 O A:HOH301 3.3 24.5 1.0 O A:HOH249 3.3 13.6 1.0 ND2 A:ASN36 3.3 10.4 1.0 HD21 A:LEU14 3.4 16.5 1.0 O A:HOH306 3.4 19.2 1.0 HB2 A:ALA33 3.4 10.8 1.0 HZ1 A:LYS17 3.5 18.3 1.0 HZ2 A:LYS17 3.5 18.3 1.0 CA A:ALA33 3.6 7.4 1.0 HD21 A:ASN36 3.7 12.5 1.0 HB2 A:ASN36 3.7 11.1 1.0 HE2 A:LYS17 3.9 18.7 1.0 HD3 A:LYS17 3.9 16.5 1.0 CB A:ALA33 4.0 9.0 1.0 N A:ALA33 4.0 7.7 1.0 HD22 A:LEU14 4.0 16.5 1.0 CD2 A:LEU14 4.0 13.8 1.0 CG2 A:THR32 4.0 12.5 1.0 CE A:LYS17 4.0 15.6 1.0 HD23 A:LEU14 4.1 16.5 1.0 HB1 A:ALA33 4.2 10.8 1.0 O A:THR32 4.2 8.4 1.0 C A:THR32 4.2 8.4 1.0 CG A:ASN36 4.3 8.6 1.0 H A:ALA33 4.3 9.2 1.0 CB A:ASN36 4.4 9.2 1.0 HG22 A:THR32 4.4 15.0 1.0 HG23 A:THR32 4.5 15.0 1.0 CD A:LYS17 4.5 13.8 1.0 HB A:THR32 4.6 13.6 1.0 HB3 A:ASN36 4.6 11.1 1.0 O A:HOH281 4.6 23.4 1.0 CB A:THR32 4.8 11.3 1.0 HB3 A:ALA33 4.8 10.8 1.0 C A:ALA33 4.9 7.8 1.0 HE3 A:LYS17 4.9 18.7 1.0 HD2 A:LYS17 4.9 16.5 1.0

H.J.Wienkers, H.Han, F.G.Whitby, C.P.Hill. VPS4 Substrate Binding and Coupled Mechanisms of VPS4P Substrate Recruitment and Release From Autoinhibition. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39282404
DOI: 10.1101/2024.09.07.611824