Chlorine in PDB 9cvb: Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp

Enzymatic activity of Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp

All present enzymatic activity of Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp:
2.7.1.15;

Protein crystallography data

The structure of Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp, PDB code: 9cvb was solved by J.Park, N.N.Akanmori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	55.97 / 1.45
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	45.41, 70.93, 90.92, 90, 92.49, 90
*R / R_free (%)*	13 / 17.6

Other elements in 9cvb:

The structure of Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Magnesium	(Mg)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp (pdb code 9cvb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp, PDB code: 9cvb:

Chlorine binding site 1 out of 1 in 9cvb

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Chlorine Binding Sites List in 9cvb

Chlorine binding site 1 out of 1 in the Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Ribokinase in Complex with K+, MG2+, and Amppnp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl406 b:31.8 occ:1.00	N	B:GLY126	3.2	18.7	1.0
	O	A:HOH696	3.2	27.6	1.0
	O	A:HOH754	3.4	50.1	1.0
	O	B:HOH654	3.5	29.7	1.0
	N	B:ALA125	3.7	17.4	1.0
	CD1	B:LEU129	3.8	23.0	1.0
	CG1	B:VAL124	3.8	18.5	1.0
	O	A:HIS45	3.9	24.7	1.0
	CA	B:GLY126	3.9	17.9	1.0
	O	A:GLY44	4.1	26.8	1.0
	C	A:HIS45	4.2	23.1	1.0
	C	B:ALA125	4.2	17.7	1.0
	CA	A:HIS45	4.2	22.8	1.0
	CA	B:ALA125	4.3	18.8	1.0
	C	B:VAL124	4.3	17.5	1.0
	CB	B:ALA125	4.4	22.5	1.0
	CA	B:VAL124	4.6	16.8	1.0
	CG	B:LEU129	4.7	20.5	1.0
	O	B:GLY126	4.8	18.6	1.0
	CB	B:VAL124	4.9	17.6	1.0
	C	B:GLY126	4.9	17.2	1.0
	C	A:GLY44	4.9	24.2	1.0
	N	A:LYS46	5.0	19.4	1.0

Reference:

N.N.Akanmori, J.Park. To Be Published To Be Published.

Page generated: Sat Aug 23 00:39:22 2025

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