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Chlorine in PDB 9eh5: Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation

Enzymatic activity of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation

All present enzymatic activity of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation:
1.10.3.9;

Other elements in 9eh5:

The structure of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Magnesium (Mg) 70 atoms
Iron (Fe) 6 atoms
Manganese (Mn) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation (pdb code 9eh5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation, PDB code: 9eh5:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 9eh5

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Chlorine binding site 1 out of 4 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:21.8
occ:1.00
 O D:HOH539 2.9 5.5 1.0
O A:HOH626 3.0 17.8 1.0
O A:HOH583 3.3 6.4 1.0
N A:GLU333 3.3 3.5 1.0
ND2 A:ASN181 3.3 1.0 1.0
O A:HOH630 3.6 25.7 1.0
O A:HOH598 3.7 8.0 1.0
CA A:HIS332 3.8 2.4 1.0
CB A:HIS332 3.8 2.7 1.0
CB D:ALA317 4.0 1.9 1.0
C A:HIS332 4.0 3.6 1.0
CG A:ASN181 4.2 0.7 1.0
OD1 A:ASN181 4.2 2.9 1.0
CG A:GLU333 4.3 8.6 1.0
CD1 D:LEU321 4.3 0.8 1.0
CA A:GLU333 4.4 5.7 1.0
O D:HOH517 4.4 30.0 1.0
CG2 A:VAL185 4.4 1.3 1.0
CD2 D:LEU321 4.5 1.9 1.0
CG D:LEU321 4.5 0.8 1.0
O D:ALA317 4.7 0.9 1.0
CG A:HIS332 4.8 5.2 1.0
CA D:ALA317 4.9 1.2 1.0
O A:HOH593 4.9 14.4 1.0
CB A:GLU333 4.9 5.9 1.0
C D:ALA317 5.0 0.7 1.0

Chlorine binding site 2 out of 4 in 9eh5

Go back to Chlorine Binding Sites List in 9eh5
Chlorine binding site 2 out of 4 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:6.5
occ:1.00
 O C:HOH671 3.0 1.4 1.0
N A:ASN338 3.1 5.9 1.0
O A:HOH611 3.3 15.1 1.0
N C:GLU341 3.4 3.3 1.0
CD2 A:PHE339 3.6 3.4 1.0
N A:PHE339 3.7 5.7 1.0
CA A:HIS337 3.7 5.9 1.0
CA C:GLY340 3.8 3.4 1.0
C A:HIS337 3.9 4.7 1.0
CA A:ASN338 4.0 5.7 1.0
C C:GLY340 4.1 3.2 1.0
CB A:PHE339 4.2 3.9 1.0
CB A:ASN338 4.2 4.4 1.0
CG A:PHE339 4.3 3.7 1.0
CB C:GLU341 4.3 5.1 1.0
C A:ASN338 4.3 6.8 1.0
O A:ALA336 4.3 9.9 1.0
CB A:HIS337 4.4 4.3 1.0
O C:HOH680 4.4 3.7 1.0
CE2 A:PHE339 4.4 3.3 1.0
CA C:GLU341 4.5 2.8 1.0
CA A:PHE339 4.5 4.4 1.0
O C:HOH634 4.5 15.8 1.0
CG C:GLU341 4.7 7.0 1.0
O A:PHE339 4.9 6.4 1.0
CG A:ASN338 4.9 8.3 1.0
N A:HIS337 4.9 4.8 1.0
O C:GLY339 4.9 4.1 1.0
N C:GLY340 4.9 2.8 1.0
CD2 A:HIS337 5.0 6.8 1.0
N C:THR342 5.0 2.5 1.0

Chlorine binding site 3 out of 4 in 9eh5

Go back to Chlorine Binding Sites List in 9eh5
Chlorine binding site 3 out of 4 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:21.8
occ:1.00
 O d:HOH539 2.9 5.5 1.0
O a:HOH627 3.0 17.8 1.0
O a:HOH583 3.3 6.4 1.0
N a:GLU333 3.3 3.5 1.0
ND2 a:ASN181 3.3 1.0 1.0
O a:HOH631 3.6 25.7 1.0
O a:HOH598 3.7 8.0 1.0
CA a:HIS332 3.8 2.4 1.0
CB a:HIS332 3.8 2.7 1.0
CB d:ALA317 4.0 1.9 1.0
C a:HIS332 4.0 3.6 1.0
CG a:ASN181 4.2 0.7 1.0
OD1 a:ASN181 4.2 2.9 1.0
CG a:GLU333 4.3 8.6 1.0
CD1 d:LEU321 4.3 0.8 1.0
CA a:GLU333 4.4 5.7 1.0
O d:HOH517 4.4 30.0 1.0
CG2 a:VAL185 4.4 1.3 1.0
CD2 d:LEU321 4.5 1.9 1.0
CG d:LEU321 4.5 0.8 1.0
O d:ALA317 4.7 0.9 1.0
CG a:HIS332 4.8 5.2 1.0
CA d:ALA317 4.9 1.2 1.0
O a:HOH593 4.9 14.4 1.0
CB a:GLU333 4.9 5.9 1.0
C d:ALA317 5.0 0.7 1.0

Chlorine binding site 4 out of 4 in 9eh5

Go back to Chlorine Binding Sites List in 9eh5
Chlorine binding site 4 out of 4 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl404

b:6.5
occ:1.00
 O c:HOH671 3.0 1.4 1.0
N a:ASN338 3.1 5.9 1.0
O a:HOH611 3.3 15.1 1.0
N c:GLU341 3.4 3.3 1.0
CD2 a:PHE339 3.6 3.4 1.0
N a:PHE339 3.7 5.7 1.0
CA a:HIS337 3.7 5.9 1.0
CA c:GLY340 3.8 3.4 1.0
C a:HIS337 3.9 4.7 1.0
CA a:ASN338 4.0 5.7 1.0
C c:GLY340 4.1 3.2 1.0
CB a:PHE339 4.2 3.9 1.0
CB a:ASN338 4.2 4.4 1.0
CG a:PHE339 4.3 3.7 1.0
CB c:GLU341 4.3 5.1 1.0
C a:ASN338 4.3 6.8 1.0
O a:ALA336 4.3 9.9 1.0
CB a:HIS337 4.4 4.3 1.0
O c:HOH680 4.4 3.7 1.0
CE2 a:PHE339 4.4 3.3 1.0
CA c:GLU341 4.5 2.8 1.0
CA a:PHE339 4.5 4.4 1.0
O c:HOH634 4.5 15.8 1.0
CG c:GLU341 4.7 7.0 1.0
O a:PHE339 4.9 6.4 1.0
CG a:ASN338 4.9 8.3 1.0
N a:HIS337 4.9 4.8 1.0
O c:GLY339 4.9 4.1 1.0
N c:GLY340 4.9 2.8 1.0
CD2 a:HIS337 5.0 6.8 1.0
N c:THR342 5.0 2.5 1.0

Reference:

D.A.Flesher, J.Shin, R.J.Debus, G.W.Brudvig. Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation. J.Biol.Chem. 08272 2025.
ISSN: ESSN 1083-351X
PubMed: 39922494
DOI: 10.1016/J.JBC.2025.108272
Page generated: Tue Feb 25 09:11:26 2025

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