Chlorine in PDB 9eto: Psik From Psilocybe Cubensis
Enzymatic activity of Psik From Psilocybe Cubensis
All present enzymatic activity of Psik From Psilocybe Cubensis:
2.7.1.222;
Protein crystallography data
The structure of Psik From Psilocybe Cubensis, PDB code: 9eto
was solved by
S.Werten,
B.Rupp,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.11 /
2.54
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.82,
70.14,
118.9,
90,
95.84,
90
|
R / Rfree (%)
|
19.7 /
24.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Psik From Psilocybe Cubensis
(pdb code 9eto). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Psik From Psilocybe Cubensis, PDB code: 9eto:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 9eto
Go back to
Chlorine Binding Sites List in 9eto
Chlorine binding site 1 out
of 5 in the Psik From Psilocybe Cubensis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Psik From Psilocybe Cubensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl406
b:54.4
occ:1.00
|
O
|
B:HOH501
|
3.0
|
44.4
|
1.0
|
CA
|
A:PHE170
|
3.8
|
46.0
|
1.0
|
CA
|
B:PHE170
|
3.8
|
46.7
|
1.0
|
CD1
|
A:PHE170
|
4.0
|
49.4
|
1.0
|
CD1
|
B:PHE170
|
4.0
|
43.9
|
1.0
|
N
|
A:PHE170
|
4.3
|
46.0
|
1.0
|
O
|
A:LYS169
|
4.3
|
52.2
|
1.0
|
N
|
B:PHE170
|
4.4
|
50.0
|
1.0
|
O
|
B:LYS169
|
4.4
|
55.3
|
1.0
|
CB
|
A:PHE170
|
4.4
|
46.0
|
1.0
|
CB
|
B:PHE170
|
4.4
|
43.7
|
1.0
|
C
|
A:LYS169
|
4.5
|
49.4
|
1.0
|
C
|
B:LYS169
|
4.6
|
52.7
|
1.0
|
CG
|
A:PHE170
|
4.7
|
46.1
|
1.0
|
O
|
A:HOH501
|
4.7
|
44.0
|
1.0
|
CG
|
B:PHE170
|
4.7
|
42.1
|
1.0
|
O
|
B:PHE170
|
4.7
|
42.5
|
1.0
|
O
|
A:PHE170
|
4.7
|
45.8
|
1.0
|
C
|
A:PHE170
|
4.8
|
46.0
|
1.0
|
C
|
B:PHE170
|
4.8
|
44.8
|
1.0
|
O
|
A:PRO166
|
4.9
|
50.8
|
1.0
|
CE1
|
A:PHE170
|
4.9
|
47.9
|
1.0
|
O
|
B:PRO166
|
5.0
|
54.0
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 9eto
Go back to
Chlorine Binding Sites List in 9eto
Chlorine binding site 2 out
of 5 in the Psik From Psilocybe Cubensis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Psik From Psilocybe Cubensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl407
b:85.6
occ:1.00
|
N
|
A:GLY323
|
3.4
|
60.6
|
1.0
|
CA
|
A:GLY323
|
4.1
|
62.6
|
1.0
|
C
|
A:TRP322
|
4.4
|
61.3
|
1.0
|
CA
|
A:TRP322
|
4.5
|
58.7
|
1.0
|
CD1
|
A:TRP322
|
4.6
|
51.2
|
1.0
|
CB
|
A:TRP322
|
4.8
|
54.8
|
1.0
|
NE2
|
A:GLN276
|
4.9
|
49.8
|
1.0
|
O
|
A:GLY323
|
4.9
|
74.8
|
1.0
|
CG
|
A:TRP322
|
5.0
|
51.9
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 9eto
Go back to
Chlorine Binding Sites List in 9eto
Chlorine binding site 3 out
of 5 in the Psik From Psilocybe Cubensis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Psik From Psilocybe Cubensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl408
b:74.9
occ:1.00
|
N
|
A:THR52
|
3.2
|
60.8
|
1.0
|
OG1
|
A:THR52
|
3.6
|
72.1
|
1.0
|
CA
|
A:HIS51
|
3.6
|
57.2
|
1.0
|
N
|
A:SER53
|
3.8
|
53.9
|
1.0
|
C
|
A:HIS51
|
3.9
|
59.3
|
1.0
|
OG
|
A:SER53
|
4.0
|
70.4
|
1.0
|
CB
|
A:HIS51
|
4.0
|
55.2
|
1.0
|
ND1
|
A:HIS51
|
4.2
|
64.2
|
1.0
|
CA
|
A:THR52
|
4.2
|
64.3
|
1.0
|
C
|
A:THR52
|
4.5
|
59.2
|
1.0
|
O
|
A:SER53
|
4.5
|
51.4
|
1.0
|
CG
|
A:HIS51
|
4.5
|
57.6
|
1.0
|
CB
|
A:THR52
|
4.6
|
65.9
|
1.0
|
O
|
A:GLY50
|
4.6
|
57.7
|
1.0
|
CA
|
A:SER53
|
4.8
|
56.7
|
1.0
|
N
|
A:HIS51
|
4.8
|
55.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 9eto
Go back to
Chlorine Binding Sites List in 9eto
Chlorine binding site 4 out
of 5 in the Psik From Psilocybe Cubensis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Psik From Psilocybe Cubensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl407
b:74.4
occ:1.00
|
N
|
B:GLY323
|
3.4
|
55.2
|
1.0
|
CA
|
B:GLY323
|
4.1
|
59.1
|
1.0
|
C
|
B:TRP322
|
4.3
|
54.3
|
1.0
|
CA
|
B:TRP322
|
4.4
|
53.7
|
1.0
|
CD1
|
B:TRP322
|
4.6
|
56.9
|
1.0
|
O
|
B:GLY323
|
4.8
|
77.5
|
1.0
|
CB
|
B:TRP322
|
4.8
|
51.6
|
1.0
|
NE2
|
B:GLN276
|
4.9
|
43.7
|
1.0
|
C
|
B:GLY323
|
4.9
|
62.6
|
1.0
|
CG
|
B:TRP322
|
5.0
|
53.5
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 9eto
Go back to
Chlorine Binding Sites List in 9eto
Chlorine binding site 5 out
of 5 in the Psik From Psilocybe Cubensis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Psik From Psilocybe Cubensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl408
b:84.4
occ:1.00
|
N
|
B:THR52
|
3.4
|
63.5
|
1.0
|
OG1
|
B:THR52
|
3.4
|
73.7
|
1.0
|
CA
|
B:HIS51
|
3.9
|
58.6
|
1.0
|
N
|
B:SER53
|
4.0
|
59.4
|
1.0
|
OG
|
B:SER53
|
4.1
|
67.0
|
1.0
|
C
|
B:HIS51
|
4.2
|
59.4
|
1.0
|
CA
|
B:THR52
|
4.3
|
64.5
|
1.0
|
CB
|
B:HIS51
|
4.4
|
57.2
|
1.0
|
CB
|
B:THR52
|
4.5
|
67.7
|
1.0
|
ND1
|
B:HIS51
|
4.5
|
63.3
|
1.0
|
C
|
B:THR52
|
4.6
|
61.3
|
1.0
|
O
|
B:GLY50
|
4.7
|
62.0
|
1.0
|
O
|
B:SER53
|
4.8
|
56.9
|
1.0
|
CG
|
B:HIS51
|
4.9
|
60.5
|
1.0
|
|
Reference:
K.Rogge,
T.J.Wagner,
D.Hoffmeister,
B.Rupp,
S.Werten.
Substrate Recognition By the 4-Hydroxytryptamine Kinase Psik in Psilocybin Biosynthesis. Febs Lett. 2024.
ISSN: ISSN 0014-5793
PubMed: 39449146
DOI: 10.1002/1873-3468.15042
Page generated: Wed Nov 13 07:53:20 2024
|