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Chlorine in PDB 9feu: Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State (pdb code 9feu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State, PDB code: 9feu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 9feu

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Chlorine binding site 1 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:43.4
occ:1.00
 O A:HOH613 2.8 30.0 1.0
O A:SER104 3.3 12.1 1.0
N A:SER104 3.4 11.2 1.0
ND1 B:HIS107 3.7 7.2 1.0
OG A:SER104 3.7 28.6 1.0
CA B:HIS107 3.9 5.7 1.0
CE2 B:PHE105 4.0 5.9 1.0
CD A:LYS103 4.0 28.1 1.0
N B:GLY108 4.0 5.1 1.0
CB B:HIS107 4.0 5.4 1.0
CG B:HIS107 4.1 7.4 1.0
CA A:LYS103 4.1 15.9 1.0
C A:SER104 4.2 7.1 1.0
O B:HOH617 4.2 30.0 1.0
O A:HOH672 4.2 30.0 1.0
CA A:SER104 4.2 9.2 1.0
C A:LYS103 4.3 16.1 1.0
NZ A:LYS103 4.3 32.9 1.0
OD2 A:ASP101 4.3 19.4 1.0
C B:HIS107 4.5 6.8 1.0
CD2 B:PHE105 4.5 5.8 1.0
CE1 B:HIS107 4.5 5.1 1.0
CE A:LYS103 4.6 32.7 1.0
CB A:SER104 4.6 10.2 1.0
O A:LYS102 4.8 25.9 1.0
CZ B:PHE105 4.9 4.8 1.0
CG2 B:VAL109 4.9 3.6 1.0
CG A:LYS103 4.9 22.9 1.0
N B:HIS107 5.0 5.3 1.0
N A:LYS103 5.0 18.7 1.0

Chlorine binding site 2 out of 5 in 9feu

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Chlorine binding site 2 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:43.4
occ:1.00
 O B:HOH613 2.7 30.0 1.0
O B:SER104 3.3 12.1 1.0
N B:SER104 3.4 11.2 1.0
ND1 C:HIS107 3.7 7.2 1.0
OG B:SER104 3.7 28.6 1.0
CA C:HIS107 3.9 5.7 1.0
CE2 C:PHE105 4.0 5.9 1.0
CD B:LYS103 4.0 28.1 1.0
N C:GLY108 4.0 5.1 1.0
CB C:HIS107 4.0 5.4 1.0
CG C:HIS107 4.1 7.4 1.0
CA B:LYS103 4.1 15.9 1.0
C B:SER104 4.2 7.1 1.0
O C:HOH624 4.2 30.0 1.0
CA B:SER104 4.2 9.2 1.0
C B:LYS103 4.3 16.1 1.0
NZ B:LYS103 4.3 32.9 1.0
O B:HOH674 4.3 30.0 1.0
OD2 B:ASP101 4.3 19.4 1.0
C C:HIS107 4.5 6.8 1.0
CD2 C:PHE105 4.5 5.8 1.0
CE1 C:HIS107 4.5 5.1 1.0
CB B:SER104 4.6 10.2 1.0
CE B:LYS103 4.6 32.7 1.0
O B:LYS102 4.9 25.9 1.0
CZ C:PHE105 4.9 4.8 1.0
CG2 C:VAL109 4.9 3.6 1.0
N C:HIS107 5.0 5.3 1.0
CG B:LYS103 5.0 22.9 1.0
N B:LYS103 5.0 18.7 1.0

Chlorine binding site 3 out of 5 in 9feu

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Chlorine binding site 3 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl506

b:43.4
occ:1.00
 O C:HOH613 2.7 30.0 1.0
O C:SER104 3.3 12.1 1.0
N C:SER104 3.4 11.2 1.0
ND1 D:HIS107 3.7 7.2 1.0
OG C:SER104 3.7 28.6 1.0
CA D:HIS107 3.9 5.7 1.0
CE2 D:PHE105 4.0 5.9 1.0
CD C:LYS103 4.0 28.1 1.0
N D:GLY108 4.0 5.1 1.0
CB D:HIS107 4.0 5.4 1.0
CG D:HIS107 4.1 7.4 1.0
CA C:LYS103 4.1 15.9 1.0
O D:HOH625 4.1 30.0 1.0
C C:SER104 4.2 7.1 1.0
CA C:SER104 4.2 9.2 1.0
C C:LYS103 4.3 16.1 1.0
NZ C:LYS103 4.3 32.9 1.0
O C:HOH673 4.3 30.0 1.0
OD2 C:ASP101 4.3 19.4 1.0
C D:HIS107 4.5 6.8 1.0
CD2 D:PHE105 4.5 5.8 1.0
CE1 D:HIS107 4.5 5.1 1.0
CB C:SER104 4.6 10.2 1.0
CE C:LYS103 4.6 32.7 1.0
O C:LYS102 4.9 25.9 1.0
CZ D:PHE105 4.9 4.8 1.0
CG2 D:VAL109 4.9 3.6 1.0
CG C:LYS103 5.0 22.9 1.0
N D:HIS107 5.0 5.3 1.0

Chlorine binding site 4 out of 5 in 9feu

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Chlorine binding site 4 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl505

b:43.4
occ:1.00
 O D:HOH614 2.7 30.0 1.0
O D:SER104 3.3 12.1 1.0
N D:SER104 3.4 11.2 1.0
ND1 E:HIS107 3.7 7.2 1.0
OG D:SER104 3.7 28.6 1.0
CA E:HIS107 3.9 5.7 1.0
CE2 E:PHE105 4.0 5.9 1.0
N E:GLY108 4.0 5.1 1.0
CD D:LYS103 4.0 28.1 1.0
CB E:HIS107 4.0 5.4 1.0
CG E:HIS107 4.1 7.4 1.0
CA D:LYS103 4.1 15.9 1.0
C D:SER104 4.1 7.1 1.0
O E:HOH626 4.2 30.0 1.0
CA D:SER104 4.2 9.2 1.0
C D:LYS103 4.3 16.1 1.0
O D:HOH672 4.3 30.0 1.0
OD2 D:ASP101 4.3 19.4 1.0
NZ D:LYS103 4.3 32.9 1.0
C E:HIS107 4.5 6.8 1.0
CD2 E:PHE105 4.5 5.8 1.0
CE1 E:HIS107 4.5 5.1 1.0
CB D:SER104 4.6 10.2 1.0
CE D:LYS103 4.6 32.7 1.0
O D:LYS102 4.9 25.9 1.0
CZ E:PHE105 4.9 4.8 1.0
CG2 E:VAL109 4.9 3.6 1.0
N E:HIS107 5.0 5.3 1.0
CG D:LYS103 5.0 22.9 1.0
N D:LYS103 5.0 18.7 1.0

Chlorine binding site 5 out of 5 in 9feu

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Chlorine binding site 5 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl505

b:43.4
occ:1.00
 O E:HOH613 2.7 30.0 1.0
O E:SER104 3.3 12.1 1.0
N E:SER104 3.4 11.2 1.0
ND1 A:HIS107 3.7 7.2 1.0
OG E:SER104 3.7 28.6 1.0
CA A:HIS107 3.9 5.7 1.0
CE2 A:PHE105 4.0 5.9 1.0
N A:GLY108 4.0 5.1 1.0
CD E:LYS103 4.0 28.1 1.0
CB A:HIS107 4.0 5.4 1.0
CG A:HIS107 4.1 7.4 1.0
CA E:LYS103 4.1 15.9 1.0
C E:SER104 4.2 7.1 1.0
O A:HOH625 4.2 30.0 1.0
CA E:SER104 4.2 9.2 1.0
C E:LYS103 4.3 16.1 1.0
O E:HOH673 4.3 30.0 1.0
OD2 E:ASP101 4.3 19.4 1.0
NZ E:LYS103 4.3 32.9 1.0
C A:HIS107 4.5 6.8 1.0
CD2 A:PHE105 4.5 5.8 1.0
CE1 A:HIS107 4.5 5.1 1.0
CB E:SER104 4.6 10.2 1.0
CE E:LYS103 4.6 32.7 1.0
O E:LYS102 4.8 25.9 1.0
CZ A:PHE105 4.9 4.8 1.0
CG2 A:VAL109 4.9 3.6 1.0
N A:HIS107 5.0 5.3 1.0
CG E:LYS103 5.0 22.9 1.0
N E:LYS103 5.0 18.7 1.0

Reference:

D.B.Mihaylov, T.Malinauskas, A.R.Aricescu. Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Long-Lived Symmetric Desensitised State To Be Published.
Page generated: Sun Jul 13 16:45:01 2025

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