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Chlorine in PDB 9fex: Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5)

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) (pdb code 9fex). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5), PDB code: 9fex:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 9fex

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Chlorine binding site 1 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:35.4
occ:1.00
 O A:HOH610 2.8 30.0 1.0
N A:SER104 3.3 10.7 1.0
O A:SER104 3.4 20.1 1.0
ND1 B:HIS107 3.6 4.9 1.0
CE2 B:PHE105 3.8 4.4 1.0
CA B:HIS107 3.8 4.0 1.0
CA A:LYS103 3.9 12.3 1.0
CD A:LYS103 4.0 20.0 1.0
CB B:HIS107 4.0 4.0 1.0
N B:GLY108 4.1 4.4 1.0
CG B:HIS107 4.1 5.2 1.0
C A:LYS103 4.1 13.4 1.0
CA A:SER104 4.2 7.7 1.0
C A:SER104 4.2 8.9 1.0
CD2 B:PHE105 4.4 4.1 1.0
O A:HOH617 4.4 30.0 1.0
NZ A:LYS103 4.4 34.3 1.0
O A:LYS102 4.5 19.7 1.0
CB A:SER104 4.5 10.7 1.0
CE1 B:HIS107 4.5 3.6 1.0
C B:HIS107 4.5 5.6 1.0
OD2 A:ASP101 4.5 14.4 1.0
CE A:LYS103 4.6 28.4 1.0
N A:LYS103 4.7 12.6 1.0
CZ B:PHE105 4.7 4.7 1.0
CG A:LYS103 4.9 18.0 1.0
C A:LYS102 4.9 12.5 1.0
OG A:SER104 4.9 16.1 1.0
N B:HIS107 4.9 4.0 1.0
CB A:LYS103 4.9 15.2 1.0

Chlorine binding site 2 out of 5 in 9fex

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Chlorine binding site 2 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:35.4
occ:1.00
 O B:HOH614 2.5 30.0 1.0
N B:SER104 3.3 10.7 1.0
O B:SER104 3.4 20.1 1.0
ND1 C:HIS107 3.6 4.9 1.0
CE2 C:PHE105 3.8 4.4 1.0
CA C:HIS107 3.8 4.0 1.0
CA B:LYS103 3.9 12.3 1.0
CD B:LYS103 4.0 20.0 1.0
CB C:HIS107 4.0 4.0 1.0
N C:GLY108 4.1 4.4 1.0
CG C:HIS107 4.1 5.2 1.0
C B:LYS103 4.1 13.4 1.0
CA B:SER104 4.2 7.7 1.0
C B:SER104 4.2 8.9 1.0
O B:HOH615 4.2 30.0 1.0
CD2 C:PHE105 4.4 4.1 1.0
NZ B:LYS103 4.4 34.3 1.0
O B:LYS102 4.5 19.7 1.0
CB B:SER104 4.5 10.7 1.0
CE1 C:HIS107 4.5 3.6 1.0
C C:HIS107 4.5 5.6 1.0
OD2 B:ASP101 4.5 14.4 1.0
CE B:LYS103 4.6 28.4 1.0
N B:LYS103 4.7 12.6 1.0
CZ C:PHE105 4.7 4.7 1.0
CG B:LYS103 4.9 18.0 1.0
C B:LYS102 4.9 12.5 1.0
OG B:SER104 4.9 16.1 1.0
N C:HIS107 4.9 4.0 1.0
CB B:LYS103 4.9 15.2 1.0

Chlorine binding site 3 out of 5 in 9fex

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Chlorine binding site 3 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:35.4
occ:1.00
 O C:HOH610 2.7 30.0 1.0
N C:SER104 3.3 10.7 1.0
O C:SER104 3.4 20.1 1.0
ND1 D:HIS107 3.6 4.9 1.0
CE2 D:PHE105 3.8 4.4 1.0
CA D:HIS107 3.8 4.0 1.0
CA C:LYS103 3.9 12.3 1.0
CD C:LYS103 4.0 20.0 1.0
CB D:HIS107 4.0 4.0 1.0
N D:GLY108 4.1 4.4 1.0
CG D:HIS107 4.1 5.2 1.0
C C:LYS103 4.1 13.4 1.0
O C:HOH616 4.2 30.0 1.0
CA C:SER104 4.2 7.7 1.0
C C:SER104 4.2 8.9 1.0
CD2 D:PHE105 4.4 4.1 1.0
NZ C:LYS103 4.4 34.3 1.0
O C:LYS102 4.4 19.7 1.0
CB C:SER104 4.5 10.7 1.0
CE1 D:HIS107 4.5 3.6 1.0
C D:HIS107 4.5 5.6 1.0
OD2 C:ASP101 4.5 14.4 1.0
CE C:LYS103 4.6 28.4 1.0
N C:LYS103 4.7 12.6 1.0
CZ D:PHE105 4.7 4.7 1.0
CG C:LYS103 4.9 18.0 1.0
C C:LYS102 4.9 12.5 1.0
OG C:SER104 4.9 16.1 1.0
N D:HIS107 4.9 4.0 1.0
CB C:LYS103 4.9 15.2 1.0

Chlorine binding site 4 out of 5 in 9fex

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Chlorine binding site 4 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl502

b:35.4
occ:1.00
 O D:HOH611 2.5 30.0 1.0
N D:SER104 3.3 10.7 1.0
O D:SER104 3.4 20.1 1.0
ND1 E:HIS107 3.6 4.9 1.0
CE2 E:PHE105 3.8 4.4 1.0
CA E:HIS107 3.8 4.0 1.0
CA D:LYS103 3.9 12.3 1.0
CD D:LYS103 3.9 20.0 1.0
CB E:HIS107 4.0 4.0 1.0
N E:GLY108 4.1 4.4 1.0
CG E:HIS107 4.1 5.2 1.0
C D:LYS103 4.1 13.4 1.0
CA D:SER104 4.2 7.7 1.0
C D:SER104 4.2 8.9 1.0
O D:HOH616 4.2 30.0 1.0
CD2 E:PHE105 4.4 4.1 1.0
NZ D:LYS103 4.4 34.3 1.0
O D:LYS102 4.5 19.7 1.0
CB D:SER104 4.5 10.7 1.0
CE1 E:HIS107 4.5 3.6 1.0
C E:HIS107 4.5 5.6 1.0
OD2 D:ASP101 4.5 14.4 1.0
CE D:LYS103 4.6 28.4 1.0
N D:LYS103 4.7 12.6 1.0
CZ E:PHE105 4.7 4.7 1.0
CG D:LYS103 4.9 18.0 1.0
C D:LYS102 4.9 12.5 1.0
OG D:SER104 4.9 16.1 1.0
N E:HIS107 4.9 4.0 1.0
CB D:LYS103 4.9 15.2 1.0

Chlorine binding site 5 out of 5 in 9fex

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Chlorine binding site 5 out of 5 in the Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl502

b:35.4
occ:1.00
 O E:HOH607 2.8 30.0 1.0
N E:SER104 3.3 10.7 1.0
O E:SER104 3.4 20.1 1.0
ND1 A:HIS107 3.6 4.9 1.0
CE2 A:PHE105 3.8 4.4 1.0
CA A:HIS107 3.8 4.0 1.0
CA E:LYS103 3.9 12.3 1.0
CD E:LYS103 3.9 20.0 1.0
CB A:HIS107 4.0 4.0 1.0
N A:GLY108 4.1 4.4 1.0
CG A:HIS107 4.1 5.2 1.0
C E:LYS103 4.1 13.4 1.0
CA E:SER104 4.2 7.7 1.0
C E:SER104 4.2 8.9 1.0
CD2 A:PHE105 4.4 4.1 1.0
NZ E:LYS103 4.4 34.3 1.0
O E:HOH617 4.4 30.0 1.0
O E:LYS102 4.5 19.7 1.0
CB E:SER104 4.5 10.7 1.0
CE1 A:HIS107 4.5 3.6 1.0
C A:HIS107 4.5 5.6 1.0
OD2 E:ASP101 4.5 14.4 1.0
CE E:LYS103 4.6 28.4 1.0
CZ A:PHE105 4.7 4.7 1.0
N E:LYS103 4.7 12.6 1.0
CG E:LYS103 4.9 18.0 1.0
OG E:SER104 4.9 16.1 1.0
C E:LYS102 4.9 12.5 1.0
N A:HIS107 4.9 4.0 1.0
CB E:LYS103 4.9 15.2 1.0

Reference:

D.B.Mihaylov, T.Malinauskas, A.R.Aricescu. Cryo-Em Structure of the BETA3 Homomeric Gaba(A) Receptor in Complex with Hsm in the Short-Lived Symmetric Pre-Active State (C5) To Be Published.
Page generated: Sun Jul 13 16:45:30 2025

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