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Chlorine in PDB 9ffl: Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State (pdb code 9ffl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State, PDB code: 9ffl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9ffl

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Chlorine binding site 1 out of 2 in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl503

b:71.5
occ:1.00
N D:ASN189 3.4 54.3 1.0
N D:GLN190 3.6 54.7 1.0
CD2 D:LEU188 3.6 39.3 1.0
N D:VAL53 3.6 42.8 1.0
CA D:LEU188 3.8 49.9 1.0
CD2 D:TYR191 3.9 41.5 1.0
O D:VAL53 4.0 57.8 1.0
CB D:GLN190 4.0 46.4 1.0
C D:LEU188 4.1 56.2 1.0
CB D:LEU188 4.2 46.8 1.0
CB D:VAL53 4.2 36.7 1.0
CA D:GLN190 4.3 46.2 1.0
CA D:PRO52 4.3 43.0 1.0
CA D:VAL53 4.4 39.0 1.0
CA D:ASN189 4.4 53.2 1.0
CE2 D:TYR191 4.4 43.6 1.0
N D:TYR191 4.4 44.1 1.0
C D:ASN189 4.5 57.9 1.0
C D:PRO52 4.5 47.5 1.0
CG D:LEU188 4.6 39.7 1.0
O D:ARG187 4.6 51.0 1.0
C D:VAL53 4.6 44.0 1.0
CB D:ASN189 4.7 58.6 1.0
CG2 D:VAL53 4.7 40.3 1.0
C D:GLN190 4.8 46.6 1.0
CG D:TYR191 4.9 38.6 1.0
CB D:PRO52 5.0 44.2 1.0
NE2 D:GLN190 5.0 71.3 1.0

Chlorine binding site 2 out of 2 in 9ffl

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Chlorine binding site 2 out of 2 in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:62.3
occ:1.00
N A:ASN189 3.1 53.4 1.0
N A:GLN190 3.6 53.0 1.0
CA A:LEU188 3.7 52.9 1.0
CD2 A:LEU188 3.8 43.6 1.0
N A:VAL53 3.8 39.9 1.0
CD2 A:TYR191 3.8 42.5 1.0
C A:LEU188 3.9 55.4 1.0
CG A:GLN190 3.9 50.0 1.0
CA A:ASN189 4.0 51.0 1.0
O A:VAL53 4.1 56.6 1.0
CB A:ASN189 4.1 52.6 1.0
CB A:LEU188 4.2 49.0 1.0
C A:ASN189 4.3 55.5 1.0
ND2 A:ASN189 4.4 63.2 1.0
CE2 A:TYR191 4.4 45.9 1.0
CA A:PRO52 4.4 47.3 1.0
CB A:VAL53 4.5 41.0 1.0
O A:ARG187 4.5 53.5 1.0
CA A:VAL53 4.6 41.3 1.0
N A:TYR191 4.6 44.8 1.0
C A:PRO52 4.6 44.9 1.0
CA A:GLN190 4.7 50.1 1.0
CG A:LEU188 4.7 42.9 1.0
NE2 A:GLN190 4.7 67.7 1.0
CG A:ASN189 4.7 62.6 1.0
C A:VAL53 4.8 45.0 1.0
CG A:TYR191 4.8 41.9 1.0
CB A:GLN190 4.9 48.0 1.0
N A:LEU188 4.9 52.4 1.0
CD A:GLN190 4.9 61.9 1.0
C A:GLN190 4.9 50.1 1.0
CB A:TYR191 5.0 41.0 1.0
CB A:PRO52 5.0 46.5 1.0

Reference:

D.B.Mihaylov, T.Malinauskas, A.R.Aricescu. Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Symmetric Pre-Active State To Be Published.
Page generated: Sun Jul 13 16:45:30 2025

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