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Chlorine in PDB 9ffn: Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1 (pdb code 9ffn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1, PDB code: 9ffn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9ffn

Go back to Chlorine Binding Sites List in 9ffn
Chlorine binding site 1 out of 2 in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl504

b:49.9
occ:1.00
N D:ASN189 3.2 43.5 1.0
N D:VAL53 3.6 36.4 1.0
CD2 D:TYR191 3.7 42.4 1.0
N D:GLN190 3.7 41.8 1.0
CA D:LEU188 3.8 44.1 1.0
CD2 D:LEU188 3.8 38.2 1.0
CG D:GLN190 3.9 47.1 1.0
C D:LEU188 4.0 46.5 1.0
O D:VAL53 4.0 54.8 1.0
CA D:PRO52 4.1 39.5 1.0
CA D:ASN189 4.1 38.3 1.0
CB D:ASN189 4.2 41.7 1.0
CB D:LEU188 4.3 43.2 1.0
C D:PRO52 4.3 39.3 1.0
C D:ASN189 4.4 40.7 1.0
CA D:VAL53 4.4 36.0 1.0
CE2 D:TYR191 4.4 44.7 1.0
CB D:VAL53 4.5 35.9 1.0
N D:TYR191 4.5 41.5 1.0
CB D:PRO52 4.5 36.5 1.0
OD1 D:ASN189 4.5 45.3 1.0
O D:ARG187 4.6 42.9 1.0
CB D:TYR191 4.7 40.2 1.0
CG D:TYR191 4.7 40.7 1.0
CA D:GLN190 4.7 41.8 1.0
C D:VAL53 4.7 41.8 1.0
CG D:ASN189 4.7 46.6 1.0
CG D:LEU188 4.7 41.4 1.0
NE2 D:GLN190 4.7 64.2 1.0
C D:GLN190 4.9 43.7 1.0
CG2 D:VAL53 4.9 38.2 1.0
CD D:GLN190 4.9 62.3 1.0
CB D:GLN190 4.9 42.6 1.0
N D:LEU188 5.0 43.5 1.0

Chlorine binding site 2 out of 2 in 9ffn

Go back to Chlorine Binding Sites List in 9ffn
Chlorine binding site 2 out of 2 in the Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:58.5
occ:1.00
CD2 A:TYR191 3.4 42.6 1.0
N A:VAL53 3.5 33.0 1.0
O A:VAL53 3.5 51.1 1.0
N A:ASN189 3.5 45.1 1.0
N A:GLN190 3.8 43.7 1.0
CE2 A:TYR191 3.9 39.6 1.0
CG A:GLN190 3.9 51.6 1.0
CD2 A:LEU188 4.0 33.6 1.0
CB A:VAL53 4.1 29.9 1.0
CA A:VAL53 4.1 29.1 1.0
CA A:LEU188 4.3 40.0 1.0
C A:VAL53 4.3 34.3 1.0
CA A:ASN189 4.3 42.5 1.0
CB A:ASN189 4.3 45.1 1.0
CA A:PRO52 4.4 37.3 1.0
C A:LEU188 4.4 46.5 1.0
C A:PRO52 4.4 39.1 1.0
CG A:TYR191 4.6 40.1 1.0
C A:ASN189 4.6 46.0 1.0
NE2 A:GLN190 4.6 75.7 1.0
CB A:LEU188 4.6 36.7 1.0
CA A:GLN190 4.7 47.5 1.0
N A:TYR191 4.7 42.9 1.0
CB A:PRO52 4.7 34.7 1.0
CD A:GLN190 4.8 69.9 1.0
C A:GLN190 4.8 46.8 1.0
CG2 A:VAL53 4.8 33.7 1.0
CB A:GLN190 4.9 47.2 1.0
CB A:TYR191 4.9 37.1 1.0

Reference:

D.B.Mihaylov, T.Malinauskas, A.R.Aricescu. Cryo-Em Structure of the ALPHA1BETA3 Gaba(A) Receptor in Complex with Gaba and MB25 in the Short-Lived Asymmetric Pre-Active 1 State of Branch 1 To Be Published.
Page generated: Sun Jul 13 16:45:57 2025

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