Chlorine in PDB 9g5l: Stapylococcus Aureus Mazf in Complex with Nanobody 10

Protein crystallography data

The structure of Stapylococcus Aureus Mazf in Complex with Nanobody 10, PDB code: 9g5l was solved by M.Prolic-Kalinsek, S.Haesaerts, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.60 / 1.82
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 99.04, 99.04, 70.26, 90, 90, 90
R / Rfree (%) 20.1 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Stapylococcus Aureus Mazf in Complex with Nanobody 10 (pdb code 9g5l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Stapylococcus Aureus Mazf in Complex with Nanobody 10, PDB code: 9g5l:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9g5l

Go back to Chlorine Binding Sites List in 9g5l
Chlorine binding site 1 out of 2 in the Stapylococcus Aureus Mazf in Complex with Nanobody 10


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Stapylococcus Aureus Mazf in Complex with Nanobody 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:74.6
occ:1.00
NH1 A:ARG24 3.5 62.1 1.0
NE A:ARG49 3.6 85.9 1.0
N A:GLY48 3.7 52.6 1.0
NH2 A:ARG24 4.1 64.1 1.0
N A:ARG49 4.2 56.7 1.0
OG1 A:THR47 4.2 55.1 1.0
CA A:GLY48 4.2 58.6 1.0
CZ A:ARG24 4.3 61.4 1.0
NH2 A:ARG49 4.4 95.1 1.0
CD A:ARG49 4.4 79.3 1.0
CZ A:ARG49 4.5 91.5 1.0
C A:GLY48 4.5 59.0 1.0
C A:THR47 4.8 50.9 1.0
CG A:ARG49 4.8 74.2 1.0
CA A:THR47 4.8 48.4 1.0
CB A:ARG49 4.9 62.0 1.0
CA A:ARG49 5.0 59.8 1.0

Chlorine binding site 2 out of 2 in 9g5l

Go back to Chlorine Binding Sites List in 9g5l
Chlorine binding site 2 out of 2 in the Stapylococcus Aureus Mazf in Complex with Nanobody 10


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Stapylococcus Aureus Mazf in Complex with Nanobody 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:75.2
occ:1.00
NZ A:LYS65 3.2 87.5 1.0
OG A:SER95 3.4 66.2 1.0
OH A:TYR66 3.8 63.6 1.0
CD A:LYS65 4.0 83.5 1.0
CE A:LYS65 4.2 86.3 1.0
CB A:SER95 4.4 73.8 1.0
CB A:LYS98 4.4 55.6 1.0
CE A:LYS98 4.5 66.2 1.0
CZ A:TYR66 4.7 64.5 1.0
CE2 A:TYR66 4.7 62.0 1.0
NZ A:LYS98 4.7 65.3 1.0
OE1 A:GLU62 4.8 82.9 1.0
N A:LYS98 4.8 55.7 1.0
OE2 A:GLU62 4.8 85.2 1.0
CD A:LYS98 5.0 63.7 1.0
CD A:GLU62 5.0 84.4 1.0

Reference:

M.Prolic-Kalinsek, V.Zorzini, S.Haesaerts, P.De Bruyn, R.Loris. Nanobody-Mediated Activation and Inhibition of Staphylococcus Aureus Mazf To Be Published.
Page generated: Tue Jul 30 14:04:11 2024

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