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Chlorine in PDB 9g8d: Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State.

Enzymatic activity of Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State.

All present enzymatic activity of Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State.:
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State., PDB code: 9g8d was solved by L.Sauthof, A.Schmidt, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.83 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.644, 93.577, 173.945, 90, 90, 90
R / Rfree (%) 18.6 / 22.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State. (pdb code 9g8d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State., PDB code: 9g8d:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9g8d

Go back to Chlorine Binding Sites List in 9g8d
Chlorine binding site 1 out of 2 in the Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:55.0
occ:1.00
 O A:HOH792 3.3 33.7 1.0
O A:HOH886 3.6 48.5 1.0
O A:HOH929 3.7 31.3 1.0
CG A:ARG151 3.7 32.0 1.0
CB A:ALA179 4.2 24.4 1.0
O A:HOH843 4.4 46.4 1.0
CB A:ARG151 4.5 28.9 1.0
CD A:ARG151 4.5 33.3 1.0
CA A:ARG151 4.6 26.7 1.0
O A:HOH955 4.8 46.3 1.0
NE A:ARG151 4.8 32.6 1.0
CA A:ALA179 4.9 24.7 1.0
NZ A:MLZ154 4.9 36.7 1.0
CD A:MLZ154 5.0 33.0 1.0

Chlorine binding site 2 out of 2 in 9g8d

Go back to Chlorine Binding Sites List in 9g8d
Chlorine binding site 2 out of 2 in the Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Photosensory Core Module (Pcm) of A Cyano- Phenylalanine Mutant OCNF192 of the Bathy Phytochrome AGP2 From Agrobacterium Fabrum in the Pfr State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:52.0
occ:1.00
 O A:HOH1010 2.8 53.8 1.0
NE A:ARG166 3.1 40.7 1.0
NH2 A:ARG311 3.1 51.1 1.0
NE1 A:TRP272 3.4 25.5 1.0
CE A:LYS308 3.5 42.4 1.0
NH2 A:ARG166 3.6 47.0 1.0
CZ A:ARG166 3.8 45.2 1.0
CD A:LYS308 3.8 40.6 1.0
CD A:ARG166 4.0 35.4 1.0
CZ2 A:TRP272 4.0 27.7 1.0
CE2 A:TRP272 4.1 26.3 1.0
CG A:LYS308 4.2 39.5 1.0
CZ A:ARG311 4.3 49.8 1.0
O A:HOH868 4.5 36.7 1.0
NH1 A:ARG311 4.5 52.6 1.0
CD1 A:TRP272 4.6 26.4 1.0
CG1 A:VAL142 4.8 30.9 1.0
NZ A:LYS308 4.9 44.3 1.0

Reference:

A.D.Nguyen, N.Michael, L.Sauthof, J.Von Sass, O.T.Hoang, A.Schmidt, M.La Greca, R.Schlesinger, N.Budisa, P.Scheerer, M.A.Mroginski, A.Kraskov, P.Hildebrandt. Hydrogen Bonding and Noncovalent Electric Field Effects in the Photoconversion of A Phytochrome. J.Phys.Chem.B 2024.
ISSN: ISSN 1089-5647
PubMed: 39561028
DOI: 10.1021/ACS.JPCB.4C06419
Page generated: Tue Dec 10 19:31:42 2024

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