Chlorine in PDB 9gyy: Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium

The structure of Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium, PDB code: 9gyy was solved by M.Sharma, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.91 / 1.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.835, 83.835, 133.931, 90, 90, 120
R / Rfree (%)	17.6 / 19.8

The structure of Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium also contains other interesting chemical elements:

Sodium	(Na)	2 atoms
Iron	(Fe)	2 atoms

The binding sites of Chlorine atom in the Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium (pdb code 9gyy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium, PDB code: 9gyy:

Chlorine binding site 1 out of 1 in the Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:19.6 occ:1.00 NZ A:LYS117 3.0 25.9 1.0 OG1 B:THR147 3.0 16.6 1.0 OG1 A:THR147 3.1 16.2 1.0 NE2 A:GLN119 3.2 18.9 1.0 NE2 B:GLN119 3.3 19.8 1.0 NZ B:LYS117 3.7 19.4 1.0 CB B:THR147 3.7 17.1 1.0 CB A:THR147 3.8 15.2 1.0 CE A:LYS117 3.8 24.4 1.0 CE B:LYS117 3.8 21.9 1.0 O A:HOH409 4.0 25.5 1.0 CG2 A:THR147 4.0 16.9 1.0 CG2 B:THR147 4.1 17.6 1.0 CE1 B:HIS26 4.2 25.0 1.0 CD A:GLN119 4.3 19.1 1.0 CD B:GLN119 4.3 21.4 1.0 OE1 A:GLN119 4.4 19.2 1.0 OE1 B:GLN119 4.4 19.5 1.0 O B:HIS26 4.5 19.9 1.0 NE2 A:HIS26 4.6 13.2 0.5 O A:HIS26 4.6 19.0 1.0 ND1 B:HIS26 4.6 30.0 1.0 NE2 B:HIS26 4.9 29.3 1.0 CD2 A:HIS26 5.0 25.1 0.5

M.Sharma, N.Pudlo, M.A.Jarva, A.Kaur, A.John, L.Burchill, J.P.Lingford, R.Epa, P.Abayakoon, N.E.Scott, J.P.Turkenburg, G.J.Davies, E.C.Martens, E.D.Goddard-Borger, S.J.Williams. Sulfoglycolysis Sustains Eubacterium Rectale in Low-Fiber Diets. J.Biol.Chem. 08320 2025.
ISSN: ESSN 1083-351X
PubMed: 39956340
DOI: 10.1016/J.JBC.2025.108320