Chlorine in PDB 9gzl: Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
Enzymatic activity of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
All present enzymatic activity of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine:
1.12.7.2;
Protein crystallography data
The structure of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine, PDB code: 9gzl
was solved by
S.B.Carr,
Z.Duan,
P.Rodriguez-Macia,
K.A.Vincent,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.43 /
1.02
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.46,
88.005,
92.859,
90,
90,
90
|
|
R / Rfree (%)
|
13.9 /
15.3
|
Other elements in 9gzl:
The structure of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
(pdb code 9gzl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine, PDB code: 9gzl:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 9gzl
Go back to
Chlorine Binding Sites List in 9gzl
Chlorine binding site 1 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1004
b:21.2
occ:1.00
|
HH
|
A:TYR44
|
2.2
|
15.1
|
1.0
|
|
O
|
A:HOH1482
|
2.9
|
25.2
|
1.0
|
|
OH
|
A:TYR44
|
3.0
|
12.6
|
1.0
|
|
HB2
|
B:PRO121
|
3.0
|
13.5
|
1.0
|
|
HG13
|
B:ILE39
|
3.0
|
19.0
|
1.0
|
|
HD2
|
A:HIS75
|
3.0
|
12.3
|
1.0
|
|
HE2
|
A:TYR44
|
3.1
|
12.8
|
1.0
|
|
CD2
|
A:HIS75
|
3.7
|
10.3
|
1.0
|
|
HB3
|
B:TYR122
|
3.7
|
13.5
|
1.0
|
|
CE2
|
A:TYR44
|
3.8
|
10.7
|
1.0
|
|
CZ
|
A:TYR44
|
3.8
|
11.0
|
1.0
|
|
HG21
|
B:ILE39
|
3.9
|
17.4
|
1.0
|
|
HA
|
B:TYR122
|
3.9
|
12.9
|
1.0
|
|
CB
|
B:PRO121
|
3.9
|
11.3
|
1.0
|
|
HB3
|
A:HIS75
|
3.9
|
12.4
|
1.0
|
|
CG1
|
B:ILE39
|
3.9
|
15.8
|
1.0
|
|
HB
|
B:ILE39
|
4.0
|
17.1
|
1.0
|
|
HB3
|
B:PRO121
|
4.0
|
13.5
|
1.0
|
|
N
|
B:TYR122
|
4.2
|
11.0
|
1.0
|
|
HG12
|
B:ILE39
|
4.3
|
19.0
|
1.0
|
|
C
|
B:PRO121
|
4.3
|
10.8
|
1.0
|
|
H
|
B:TYR122
|
4.3
|
13.2
|
1.0
|
|
CB
|
B:ILE39
|
4.4
|
14.2
|
1.0
|
|
CA
|
B:TYR122
|
4.4
|
10.7
|
1.0
|
|
CG
|
A:HIS75
|
4.4
|
10.4
|
1.0
|
|
CB
|
B:TYR122
|
4.5
|
11.3
|
1.0
|
|
CG2
|
B:ILE39
|
4.6
|
14.5
|
1.0
|
|
NE2
|
A:HIS75
|
4.6
|
10.2
|
1.0
|
|
HG21
|
A:THR40
|
4.6
|
15.4
|
1.0
|
|
CB
|
A:HIS75
|
4.7
|
10.3
|
1.0
|
|
O
|
A:HOH1158
|
4.7
|
22.5
|
1.0
|
|
O
|
B:PRO121
|
4.7
|
11.3
|
1.0
|
|
HG2
|
B:PRO121
|
4.7
|
13.6
|
1.0
|
|
HG23
|
A:THR40
|
4.7
|
15.4
|
1.0
|
|
CA
|
B:PRO121
|
4.7
|
10.2
|
1.0
|
|
HB2
|
B:TYR122
|
4.8
|
13.5
|
1.0
|
|
CG
|
B:PRO121
|
4.9
|
11.3
|
1.0
|
|
HG22
|
B:ILE39
|
4.9
|
17.4
|
1.0
|
|
O
|
B:HOH207
|
4.9
|
19.6
|
1.0
|
|
CD1
|
B:ILE39
|
4.9
|
17.2
|
1.0
|
|
HD12
|
B:ILE39
|
5.0
|
20.7
|
1.0
|
|
HD11
|
B:ILE39
|
5.0
|
20.7
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 9gzl
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Chlorine Binding Sites List in 9gzl
Chlorine binding site 2 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1005
b:16.3
occ:1.00
|
H
|
A:ASP17
|
2.4
|
16.6
|
1.0
|
|
HE1
|
A:HIS14
|
2.7
|
18.7
|
1.0
|
|
HA
|
A:PRO16
|
2.9
|
16.4
|
1.0
|
|
O
|
A:HOH1423
|
3.1
|
26.4
|
1.0
|
|
O
|
A:HOH1476
|
3.1
|
37.4
|
1.0
|
|
O
|
A:HOH1508
|
3.1
|
20.8
|
1.0
|
|
HD21
|
A:LEU25
|
3.1
|
19.3
|
1.0
|
|
N
|
A:ASP17
|
3.2
|
13.9
|
1.0
|
|
HB2
|
A:ALA20
|
3.3
|
16.4
|
1.0
|
|
HD11
|
A:LEU25
|
3.6
|
20.2
|
1.0
|
|
HB2
|
A:ASP17
|
3.6
|
18.7
|
1.0
|
|
CE1
|
A:HIS14
|
3.6
|
15.6
|
1.0
|
|
HB3
|
A:ASP17
|
3.6
|
18.7
|
1.0
|
|
CA
|
A:PRO16
|
3.8
|
13.7
|
1.0
|
|
HB3
|
A:PRO16
|
3.9
|
17.0
|
1.0
|
|
HB1
|
A:ALA20
|
3.9
|
16.4
|
1.0
|
|
CB
|
A:ASP17
|
3.9
|
15.6
|
1.0
|
|
C
|
A:PRO16
|
4.0
|
13.4
|
1.0
|
|
CB
|
A:ALA20
|
4.0
|
13.6
|
1.0
|
|
CD2
|
A:LEU25
|
4.1
|
16.1
|
1.0
|
|
NE2
|
A:HIS14
|
4.1
|
15.6
|
1.0
|
|
CA
|
A:ASP17
|
4.2
|
13.9
|
1.0
|
|
CB
|
A:PRO16
|
4.4
|
14.2
|
1.0
|
|
CD1
|
A:LEU25
|
4.4
|
16.8
|
1.0
|
|
HG
|
A:LEU25
|
4.5
|
18.4
|
1.0
|
|
HD23
|
A:LEU25
|
4.5
|
19.3
|
1.0
|
|
O
|
A:HOH1270
|
4.6
|
19.7
|
1.0
|
|
HB3
|
A:ALA20
|
4.6
|
16.4
|
1.0
|
|
HD22
|
A:LEU25
|
4.6
|
19.3
|
1.0
|
|
CG
|
A:LEU25
|
4.6
|
15.3
|
1.0
|
|
ND1
|
A:HIS14
|
4.7
|
14.5
|
1.0
|
|
O
|
A:THR15
|
4.9
|
14.6
|
1.0
|
|
HA
|
A:ASP17
|
4.9
|
16.6
|
1.0
|
|
HD13
|
A:LEU25
|
4.9
|
20.2
|
1.0
|
|
N
|
A:PRO16
|
4.9
|
13.2
|
1.0
|
|
HA
|
A:ALA20
|
4.9
|
15.5
|
1.0
|
|
O
|
A:ASP17
|
5.0
|
13.3
|
1.0
|
|
HD1
|
A:HIS14
|
5.0
|
17.4
|
1.0
|
|
O
|
A:HOH1512
|
5.0
|
31.1
|
0.8
|
|
Chlorine binding site 3 out
of 7 in 9gzl
Go back to
Chlorine Binding Sites List in 9gzl
Chlorine binding site 3 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1006
b:19.3
occ:1.00
|
H
|
A:GLY128
|
2.4
|
15.5
|
1.0
|
|
HB
|
A:THR127
|
3.0
|
15.9
|
1.0
|
|
O
|
A:HOH1518
|
3.0
|
27.3
|
1.0
|
|
O
|
A:HOH1385
|
3.1
|
17.8
|
1.0
|
|
HG12
|
A:VAL125
|
3.2
|
19.0
|
1.0
|
|
H
|
A:THR127
|
3.3
|
15.2
|
1.0
|
|
N
|
A:GLY128
|
3.3
|
12.9
|
1.0
|
|
O
|
A:HOH1275
|
3.5
|
36.8
|
1.0
|
|
N
|
A:THR127
|
3.6
|
12.7
|
1.0
|
|
CB
|
A:THR127
|
3.8
|
13.2
|
1.0
|
|
HA3
|
A:GLY128
|
3.9
|
15.4
|
1.0
|
|
O
|
A:VAL125
|
4.0
|
15.5
|
1.0
|
|
CA
|
A:THR127
|
4.1
|
12.9
|
1.0
|
|
CG1
|
A:VAL125
|
4.1
|
15.9
|
1.0
|
|
C
|
A:THR127
|
4.1
|
12.2
|
1.0
|
|
HA
|
A:THR126
|
4.1
|
15.6
|
1.0
|
|
CA
|
A:GLY128
|
4.2
|
12.8
|
1.0
|
|
C
|
A:THR126
|
4.2
|
12.6
|
1.0
|
|
HG11
|
A:VAL125
|
4.3
|
19.0
|
1.0
|
|
OG1
|
A:THR127
|
4.4
|
13.4
|
1.0
|
|
C
|
A:VAL125
|
4.4
|
13.5
|
1.0
|
|
HB
|
A:VAL125
|
4.4
|
17.7
|
1.0
|
|
CA
|
A:THR126
|
4.5
|
12.9
|
1.0
|
|
H
|
A:LYS129
|
4.6
|
15.7
|
1.0
|
|
OD2
|
A:ASP279
|
4.6
|
23.3
|
1.0
|
|
HG1
|
A:THR127
|
4.6
|
16.1
|
1.0
|
|
N
|
A:THR126
|
4.6
|
12.3
|
1.0
|
|
OD1
|
A:ASP279
|
4.7
|
26.1
|
1.0
|
|
HA2
|
A:GLY128
|
4.7
|
15.4
|
1.0
|
|
HG13
|
A:VAL125
|
4.7
|
19.0
|
1.0
|
|
CB
|
A:VAL125
|
4.8
|
14.8
|
1.0
|
|
CG
|
A:ASP279
|
4.9
|
23.1
|
1.0
|
|
O
|
A:THR126
|
4.9
|
12.8
|
1.0
|
|
HG22
|
A:THR127
|
5.0
|
16.1
|
1.0
|
|
CG2
|
A:THR127
|
5.0
|
13.4
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 9gzl
Go back to
Chlorine Binding Sites List in 9gzl
Chlorine binding site 4 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1007
b:15.4
occ:1.00
|
HZ2
|
A:LYS237
|
2.3
|
12.5
|
1.0
|
|
H
|
A:ILE204
|
2.4
|
12.3
|
1.0
|
|
O
|
A:HOH1502
|
2.8
|
20.6
|
1.0
|
|
HD2
|
A:PRO203
|
2.9
|
13.6
|
1.0
|
|
HB2
|
A:PRO203
|
2.9
|
13.0
|
1.0
|
|
HZ1
|
A:LYS237
|
3.0
|
12.5
|
1.0
|
|
NZ
|
A:LYS237
|
3.0
|
10.4
|
1.0
|
|
O
|
A:HOH1432
|
3.1
|
21.8
|
1.0
|
|
HB2
|
A:SER202
|
3.1
|
13.2
|
1.0
|
|
HB
|
A:ILE204
|
3.1
|
12.7
|
1.0
|
|
HG22
|
A:ILE204
|
3.1
|
13.4
|
1.0
|
|
HE3
|
A:LYS237
|
3.1
|
12.3
|
1.0
|
|
N
|
A:ILE204
|
3.2
|
10.3
|
1.0
|
|
HG21
|
A:THR145
|
3.5
|
14.1
|
1.0
|
|
CD
|
A:PRO203
|
3.6
|
11.3
|
1.0
|
|
CE
|
A:LYS237
|
3.6
|
10.2
|
1.0
|
|
CB
|
A:PRO203
|
3.6
|
10.9
|
1.0
|
|
N
|
A:PRO203
|
3.7
|
10.4
|
1.0
|
|
CB
|
A:ILE204
|
3.7
|
10.6
|
1.0
|
|
HZ3
|
A:LYS237
|
3.7
|
12.5
|
1.0
|
|
CG2
|
A:ILE204
|
3.7
|
11.2
|
1.0
|
|
HG2
|
A:PRO203
|
3.8
|
13.2
|
1.0
|
|
HD2
|
A:LYS237
|
3.9
|
11.9
|
1.0
|
|
CB
|
A:SER202
|
3.9
|
11.0
|
1.0
|
|
OG
|
A:SER202
|
3.9
|
11.1
|
1.0
|
|
HE1
|
A:MET232
|
3.9
|
14.6
|
1.0
|
|
CG
|
A:PRO203
|
3.9
|
11.0
|
1.0
|
|
HG21
|
A:ILE204
|
3.9
|
13.4
|
1.0
|
|
CA
|
A:PRO203
|
4.0
|
10.9
|
1.0
|
|
C
|
A:PRO203
|
4.0
|
10.7
|
1.0
|
|
CA
|
A:ILE204
|
4.0
|
10.4
|
1.0
|
|
HG22
|
A:THR145
|
4.1
|
14.1
|
1.0
|
|
CG2
|
A:THR145
|
4.2
|
11.8
|
1.0
|
|
O
|
A:HOH1497
|
4.2
|
20.4
|
1.0
|
|
CD
|
A:LYS237
|
4.3
|
9.9
|
1.0
|
|
HE2
|
A:LYS237
|
4.4
|
12.3
|
1.0
|
|
C
|
A:SER202
|
4.4
|
10.6
|
1.0
|
|
HG23
|
A:THR145
|
4.4
|
14.1
|
1.0
|
|
HD3
|
A:PRO203
|
4.4
|
13.6
|
1.0
|
|
SD
|
A:MET232
|
4.5
|
10.5
|
1.0
|
|
HB3
|
A:PRO203
|
4.5
|
13.0
|
1.0
|
|
HA
|
A:ILE204
|
4.5
|
12.5
|
1.0
|
|
HB3
|
A:SER202
|
4.5
|
13.2
|
1.0
|
|
CE
|
A:MET232
|
4.6
|
12.2
|
1.0
|
|
HB2
|
A:CYS178
|
4.6
|
14.7
|
1.0
|
|
HG23
|
A:ILE204
|
4.6
|
13.4
|
1.0
|
|
O
|
A:HOH1515
|
4.7
|
20.6
|
1.0
|
|
CA
|
A:SER202
|
4.7
|
10.6
|
1.0
|
|
O
|
A:CYS178
|
4.7
|
12.5
|
1.0
|
|
HG
|
A:SER202
|
4.7
|
13.4
|
1.0
|
|
HE3
|
A:MET232
|
4.8
|
14.6
|
1.0
|
|
HD3
|
A:LYS237
|
4.8
|
11.9
|
1.0
|
|
H
|
A:GLY205
|
4.8
|
12.9
|
1.0
|
|
O
|
A:HOH1516
|
4.9
|
17.7
|
1.0
|
|
HG3
|
A:PRO203
|
4.9
|
13.2
|
1.0
|
|
HA
|
A:PRO203
|
4.9
|
13.1
|
1.0
|
|
HA
|
A:SER202
|
5.0
|
12.8
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 9gzl
Go back to
Chlorine Binding Sites List in 9gzl
Chlorine binding site 5 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1008
b:14.3
occ:1.00
|
H
|
A:ALA109
|
2.4
|
12.5
|
1.0
|
|
HB1
|
A:ALA107
|
2.8
|
12.7
|
1.0
|
|
HD2
|
A:PRO108
|
2.9
|
13.9
|
1.0
|
|
HA2
|
A:GLY297
|
2.9
|
13.5
|
1.0
|
|
HB2
|
A:PRO108
|
3.0
|
14.0
|
1.0
|
|
HB2
|
A:CYS382
|
3.0
|
11.4
|
1.0
|
|
HB2
|
A:ALA109
|
3.0
|
14.1
|
1.0
|
|
O
|
A:HOH1515
|
3.1
|
20.6
|
1.0
|
|
O
|
A:HOH1497
|
3.1
|
20.4
|
1.0
|
|
N
|
A:ALA109
|
3.2
|
10.4
|
1.0
|
|
HB3
|
A:ALA109
|
3.3
|
14.1
|
1.0
|
|
HB3
|
A:CYS382
|
3.4
|
11.4
|
1.0
|
|
CB
|
A:ALA109
|
3.5
|
11.7
|
1.0
|
|
HG2
|
A:PRO108
|
3.5
|
15.2
|
1.0
|
|
HG3
|
A:PRO233
|
3.6
|
11.6
|
1.0
|
|
CD
|
A:PRO108
|
3.6
|
11.6
|
1.0
|
|
CB
|
A:CYS382
|
3.6
|
9.5
|
1.0
|
|
CA
|
A:GLY297
|
3.7
|
11.2
|
1.0
|
|
CB
|
A:PRO108
|
3.7
|
11.7
|
1.0
|
|
HA3
|
A:GLY297
|
3.7
|
13.5
|
1.0
|
|
CB
|
A:ALA107
|
3.8
|
10.6
|
1.0
|
|
N
|
A:PRO108
|
3.8
|
9.7
|
1.0
|
|
CG
|
A:PRO108
|
3.8
|
12.6
|
1.0
|
|
HB3
|
A:ALA107
|
4.0
|
12.7
|
1.0
|
|
CA
|
A:ALA109
|
4.0
|
10.6
|
1.0
|
|
O
|
A:HOH1502
|
4.0
|
20.6
|
1.0
|
|
N
|
A:GLY297
|
4.0
|
11.2
|
1.0
|
|
SG
|
A:CYS382
|
4.1
|
10.4
|
1.0
|
|
CA
|
A:PRO108
|
4.1
|
10.8
|
1.0
|
|
C
|
A:PRO108
|
4.1
|
10.5
|
1.0
|
|
HB3
|
A:PHE296
|
4.1
|
12.9
|
1.0
|
|
O
|
A:HOH1198
|
4.2
|
17.4
|
1.0
|
|
HB2
|
A:ALA107
|
4.3
|
12.7
|
1.0
|
|
HD3
|
A:PRO233
|
4.4
|
11.2
|
1.0
|
|
C
|
A:ALA107
|
4.4
|
9.8
|
1.0
|
|
H
|
A:GLY297
|
4.4
|
13.4
|
1.0
|
|
C
|
A:PHE296
|
4.4
|
11.6
|
1.0
|
|
O
|
A:PHE296
|
4.4
|
11.6
|
1.0
|
|
HB1
|
A:ALA109
|
4.4
|
14.1
|
1.0
|
|
CG
|
A:PRO233
|
4.4
|
9.7
|
1.0
|
|
HD3
|
A:PRO108
|
4.5
|
13.9
|
1.0
|
|
HA
|
A:ALA109
|
4.5
|
12.8
|
1.0
|
|
HB3
|
A:PRO108
|
4.5
|
14.0
|
1.0
|
|
CA
|
A:ALA107
|
4.6
|
10.1
|
1.0
|
|
HA
|
A:ALA107
|
4.7
|
12.1
|
1.0
|
|
HG2
|
A:PRO233
|
4.7
|
11.6
|
1.0
|
|
CD
|
A:PRO233
|
4.7
|
9.4
|
1.0
|
|
HG3
|
A:PRO108
|
4.8
|
15.2
|
1.0
|
|
HD2
|
A:PRO233
|
4.8
|
11.2
|
1.0
|
|
HB2
|
A:PHE296
|
4.8
|
12.9
|
1.0
|
|
CB
|
A:PHE296
|
4.9
|
10.8
|
1.0
|
|
C
|
A:GLY297
|
4.9
|
10.8
|
1.0
|
|
O
|
A:HOH1248
|
4.9
|
14.0
|
1.0
|
|
CA
|
A:CYS382
|
5.0
|
9.6
|
1.0
|
|
O
|
A:HOH1432
|
5.0
|
21.8
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 9gzl
Go back to
Chlorine Binding Sites List in 9gzl
Chlorine binding site 6 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1009
b:12.4
occ:1.00
|
H
|
A:ILE60
|
2.4
|
12.1
|
1.0
|
|
H
|
A:ILE30
|
2.5
|
12.9
|
0.5
|
|
H
|
A:ILE30
|
2.5
|
12.9
|
0.5
|
|
HE21
|
A:GLN29
|
2.6
|
16.2
|
0.5
|
|
HB3
|
A:GLN29
|
3.1
|
13.6
|
0.5
|
|
HA
|
A:GLN29
|
3.1
|
13.1
|
0.5
|
|
HA
|
A:GLN29
|
3.1
|
13.1
|
0.5
|
|
HA
|
A:SER59
|
3.2
|
13.1
|
1.0
|
|
N
|
A:ILE60
|
3.2
|
10.1
|
1.0
|
|
N
|
A:ILE30
|
3.3
|
10.8
|
1.0
|
|
HB
|
A:ILE60
|
3.4
|
12.8
|
1.0
|
|
HG2
|
A:GLN29
|
3.4
|
14.6
|
0.5
|
|
NE2
|
A:GLN29
|
3.5
|
13.5
|
0.5
|
|
HB2
|
A:SER59
|
3.6
|
14.4
|
1.0
|
|
HB
|
A:ILE30
|
3.6
|
13.4
|
1.0
|
|
CB
|
A:GLN29
|
3.7
|
11.3
|
0.5
|
|
CA
|
A:GLN29
|
3.7
|
10.9
|
0.5
|
|
HB3
|
A:GLN29
|
3.7
|
13.6
|
0.5
|
|
HG13
|
A:ILE30
|
3.8
|
13.7
|
1.0
|
|
HG13
|
A:ILE60
|
3.8
|
13.9
|
1.0
|
|
CA
|
A:GLN29
|
3.8
|
10.9
|
0.5
|
|
CA
|
A:SER59
|
3.9
|
10.9
|
1.0
|
|
CG
|
A:GLN29
|
3.9
|
12.2
|
0.5
|
|
HD12
|
A:ILE60
|
3.9
|
14.8
|
1.0
|
|
HG2
|
A:GLN29
|
4.0
|
15.0
|
0.5
|
|
CB
|
A:ILE60
|
4.0
|
10.7
|
1.0
|
|
C
|
A:SER59
|
4.0
|
10.1
|
1.0
|
|
C
|
A:GLN29
|
4.0
|
10.9
|
0.5
|
|
HE22
|
A:GLN29
|
4.1
|
16.2
|
0.5
|
|
CA
|
A:ILE60
|
4.1
|
9.8
|
1.0
|
|
C
|
A:GLN29
|
4.1
|
11.1
|
0.5
|
|
CB
|
A:SER59
|
4.2
|
12.0
|
1.0
|
|
CB
|
A:GLN29
|
4.2
|
11.4
|
0.5
|
|
CD
|
A:GLN29
|
4.2
|
13.0
|
0.5
|
|
O
|
A:ILE30
|
4.2
|
13.2
|
1.0
|
|
CB
|
A:ILE30
|
4.3
|
11.1
|
1.0
|
|
CA
|
A:ILE30
|
4.3
|
11.2
|
1.0
|
|
CG1
|
A:ILE60
|
4.3
|
11.6
|
1.0
|
|
O
|
A:ILE60
|
4.3
|
11.8
|
1.0
|
|
CG1
|
A:ILE30
|
4.5
|
11.4
|
1.0
|
|
C
|
A:ILE60
|
4.5
|
10.4
|
1.0
|
|
HD2
|
A:HIS26
|
4.5
|
16.8
|
0.7
|
|
HE2
|
A:HIS26
|
4.5
|
15.9
|
0.7
|
|
HB2
|
A:GLN29
|
4.6
|
13.6
|
0.5
|
|
O
|
A:HOH1202
|
4.6
|
18.5
|
1.0
|
|
HB3
|
A:SER59
|
4.6
|
14.4
|
1.0
|
|
CD1
|
A:ILE60
|
4.6
|
12.3
|
1.0
|
|
CG
|
A:GLN29
|
4.6
|
12.5
|
0.5
|
|
HD12
|
A:ILE30
|
4.6
|
14.6
|
1.0
|
|
C
|
A:ILE30
|
4.8
|
11.8
|
1.0
|
|
HG3
|
A:GLN29
|
4.8
|
14.6
|
0.5
|
|
NE2
|
A:HIS26
|
4.9
|
13.2
|
0.7
|
|
CD2
|
A:HIS26
|
4.9
|
14.0
|
0.7
|
|
HA
|
A:ILE60
|
5.0
|
11.7
|
1.0
|
|
O
|
A:HOH1260
|
5.0
|
16.5
|
1.0
|
|
O
|
A:VAL28
|
5.0
|
11.1
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 9gzl
Go back to
Chlorine Binding Sites List in 9gzl
Chlorine binding site 7 out
of 7 in the Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Apo Fefe Hydrogenase From Desulfovibrio Desulfuricans Labelled with Cyanophenylalanine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1010
b:19.3
occ:1.00
|
HG3
|
A:PRO244
|
3.0
|
17.5
|
1.0
|
|
HA
|
A:ASP21
|
3.0
|
14.2
|
1.0
|
|
O
|
A:HOH1374
|
3.1
|
15.6
|
1.0
|
|
HD3
|
A:PRO244
|
3.2
|
16.4
|
1.0
|
|
HB2
|
A:ASP21
|
3.2
|
15.4
|
1.0
|
|
HB3
|
A:PRO244
|
3.3
|
17.5
|
1.0
|
|
O
|
A:HOH1349
|
3.3
|
29.1
|
1.0
|
|
CG
|
A:ASP21
|
3.6
|
13.8
|
1.0
|
|
CB
|
A:ASP21
|
3.6
|
12.8
|
1.0
|
|
CG
|
A:PRO244
|
3.6
|
14.6
|
1.0
|
|
CA
|
A:ASP21
|
3.7
|
11.9
|
1.0
|
|
HD2
|
A:PRO22
|
3.8
|
14.8
|
1.0
|
|
CD
|
A:PRO244
|
3.8
|
13.7
|
1.0
|
|
OD2
|
A:ASP21
|
3.9
|
15.9
|
1.0
|
|
CB
|
A:PRO244
|
3.9
|
14.6
|
1.0
|
|
OD1
|
A:ASP21
|
3.9
|
13.7
|
1.0
|
|
O
|
A:HOH1107
|
4.2
|
22.6
|
1.0
|
|
O
|
A:HOH1304
|
4.3
|
25.5
|
1.0
|
|
HD2
|
A:PRO244
|
4.5
|
16.4
|
1.0
|
|
N
|
A:ASP21
|
4.5
|
12.2
|
1.0
|
|
HG2
|
A:PRO244
|
4.5
|
17.5
|
1.0
|
|
O
|
A:HOH1173
|
4.5
|
32.1
|
1.0
|
|
HB3
|
A:ASP21
|
4.6
|
15.4
|
1.0
|
|
HD3
|
A:PRO22
|
4.6
|
14.8
|
1.0
|
|
HB2
|
A:PRO244
|
4.6
|
17.5
|
1.0
|
|
CD
|
A:PRO22
|
4.6
|
12.3
|
1.0
|
|
O
|
A:ALA20
|
4.7
|
12.9
|
1.0
|
|
LI
|
A:LI1011
|
4.7
|
14.0
|
1.0
|
|
N
|
A:PRO244
|
4.8
|
12.7
|
1.0
|
|
H
|
A:ASP21
|
4.9
|
14.7
|
1.0
|
|
CA
|
A:PRO244
|
4.9
|
13.9
|
1.0
|
|
HA
|
A:PRO244
|
4.9
|
16.6
|
1.0
|
|
C
|
A:ASP21
|
4.9
|
11.1
|
1.0
|
|
C
|
A:ALA20
|
4.9
|
12.1
|
1.0
|
|
Reference:
Z.Duan,
J.Wei,
S.B.Carr,
M.Ramirez,
R.M.Evans,
P.A.Ash,
P.Rodriguez-Macia,
A.Sachdeva,
K.A.Vincent.
Cyanophenylalanine As An Infrared Probe For Iron-Sulfur Cluster Redox State in Multi-Centre Metalloenzymes. Chembiochem 00251 2025.
ISSN: ESSN 1439-7633
PubMed: 40347495
DOI: 10.1002/CBIC.202500251
Page generated: Sun Jul 13 16:58:26 2025
|
