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Chlorine in PDB 9orv: X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose

Enzymatic activity of X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose

All present enzymatic activity of X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose, PDB code: 9orv was solved by C.W.Flowers, N.W.Vlahakis, J.A.Rodriguez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.77 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.53, 77.53, 37.89, 90, 90, 90
R / Rfree (%) 18.8 / 21

Other elements in 9orv:

The structure of X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose (pdb code 9orv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose, PDB code: 9orv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9orv

Go back to Chlorine Binding Sites List in 9orv
Chlorine binding site 1 out of 2 in the X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:24.0
occ:1.00
OH A:TYR23 3.0 17.0 1.0
O A:HOH343 3.6 23.8 1.0
CE2 A:TYR23 3.7 17.8 1.0
CZ A:TYR23 3.7 16.5 1.0
CA A:GLY104 4.1 16.3 1.0
O A:ARG21 4.6 22.3 1.0
N A:GLY104 4.7 15.5 1.0
O A:HOH310 4.9 26.9 1.0
CE1 A:TYR23 4.9 14.5 1.0
CD2 A:TYR23 4.9 16.4 1.0

Chlorine binding site 2 out of 2 in 9orv

Go back to Chlorine Binding Sites List in 9orv
Chlorine binding site 2 out of 2 in the X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Diffraction Structure of Lysozyme Co-Crystallized with N,N',N"- Triacetylchitotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:28.8
occ:1.00
OG A:SER24 3.0 22.1 1.0
N A:GLY26 3.1 16.7 1.0
CB A:SER24 3.5 20.8 1.0
CA A:GLY26 3.5 15.9 1.0
CA A:GLN121 3.6 26.6 1.0
N A:GLN121 3.9 23.4 1.0
CG A:GLN121 4.0 31.7 1.0
CB A:GLN121 4.0 28.6 1.0
CD1 A:ILE124 4.1 34.5 1.0
N A:LEU25 4.1 17.2 1.0
C A:SER24 4.3 21.9 1.0
C A:LEU25 4.3 17.4 1.0
C A:VAL120 4.3 21.2 1.0
O A:VAL120 4.3 21.6 1.0
CG2 A:VAL120 4.4 23.1 1.0
CG1 A:ILE124 4.4 26.1 1.0
CA A:SER24 4.5 22.3 1.0
C A:GLY26 4.6 16.0 1.0
CA A:LEU25 4.7 14.9 1.0
N A:ASN27 4.7 18.0 1.0
C A:GLN121 4.7 25.6 1.0
O A:SER24 4.8 20.1 1.0
O A:GLN121 4.9 28.7 1.0
CB A:LEU25 5.0 19.7 1.0

Reference:

N.W.Vlahakis, C.W.Flowers, M.Liu, M.Agdanowski, S.Johnson, J.A.Summers, L.M.C.Jacobs, C.Keyser, P.Russell, S.Rose, J.Orlans, N.Adhami, Y.Chen, M.R.Sawaya, S.Basu, D.De Sanctis, Y.Chen, S.Wakatsuki, H.M.Nelson, J.A.Loo, Y.Tang, J.A.Rodriguez. Combining Microed and Native Mass Spectrometry For Structural Discovery of Enzyme-Small Molecule Complexes To Be Published.
Page generated: Sun Jul 13 17:19:38 2025

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