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Chlorine in PDB 9pyv: Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis

Enzymatic activity of Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis:
3.2.2.27;

Protein crystallography data

The structure of Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis, PDB code: 9pyv was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.99 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.629, 63.006, 126.224, 90, 90, 90
R / Rfree (%) 16.3 / 19.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis (pdb code 9pyv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis, PDB code: 9pyv:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 9pyv

Go back to Chlorine Binding Sites List in 9pyv
Chlorine binding site 1 out of 3 in the Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:62.7
occ:1.00
NH1 A:ARG48 3.7 29.6 1.0
CG A:PRO45 4.0 30.9 1.0
NH2 A:ARG48 4.0 30.1 1.0
CZ A:ARG48 4.3 28.4 1.0
CD A:PRO45 4.4 23.8 1.0

Chlorine binding site 2 out of 3 in 9pyv

Go back to Chlorine Binding Sites List in 9pyv
Chlorine binding site 2 out of 3 in the Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:48.9
occ:1.00
O A:HOH610 3.2 45.3 1.0
O A:HOH477 3.5 23.7 1.0
O A:HOH529 3.7 25.0 1.0
N A:ALA59 3.8 17.9 1.0
CB A:ALA59 3.9 22.7 1.0
N A:ASP58 4.3 22.4 1.0
CB A:ASP58 4.3 27.5 1.0
CB A:SER57 4.4 19.1 1.0
OG A:SER57 4.4 16.8 1.0
CD A:LYS184 4.4 21.2 1.0
CA A:ALA59 4.4 15.5 1.0
C A:ASP58 4.4 21.2 1.0
CE A:LYS184 4.6 36.6 1.0
CA A:ASP58 4.6 22.8 1.0
NZ A:LYS184 4.7 45.6 1.0
O A:HOH634 4.8 34.2 1.0

Chlorine binding site 3 out of 3 in 9pyv

Go back to Chlorine Binding Sites List in 9pyv
Chlorine binding site 3 out of 3 in the Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:59.7
occ:1.00
O A:HOH445 3.3 32.9 1.0
NH2 A:ARG196 3.6 52.3 1.0
NH1 A:ARG196 3.9 54.3 1.0
CZ A:ARG196 4.2 47.0 1.0
CB A:ALA49 4.3 20.1 1.0

Reference:

P.Enayati, S.Lovell, K.P.Battaile. Crystal Structure of Uracil-Dna Glycosylase From Burkholderia Thailandensis To Be Published.
Page generated: Tue Aug 26 20:09:09 2025

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