Chlorine in PDB 9qm5: Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
Enzymatic activity of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
All present enzymatic activity of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment:
2.8.4.1;
Protein crystallography data
The structure of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment, PDB code: 9qm5
was solved by
M.-C.Mueller,
T.Wagner,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
54.30 /
1.80
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
153.478,
153.673,
212.885,
90,
90,
90
|
|
R / Rfree (%)
|
12.9 /
15.5
|
Other elements in 9qm5:
The structure of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
(pdb code 9qm5). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the
Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment, PDB code: 9qm5:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 1 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl613
b:30.6
occ:1.00
|
H
|
A:TYR31
|
2.3
|
28.4
|
1.0
|
|
HA
|
A:LYS30
|
2.8
|
31.5
|
1.0
|
|
H
|
C:GLU165
|
2.8
|
27.0
|
1.0
|
|
HB1
|
C:ALA164
|
2.9
|
26.5
|
1.0
|
|
O
|
C:HOH620
|
3.0
|
29.7
|
1.0
|
|
O
|
A:HOH1056
|
3.1
|
28.5
|
1.0
|
|
N
|
A:TYR31
|
3.2
|
23.6
|
1.0
|
|
HB2
|
A:TYR31
|
3.4
|
32.4
|
1.0
|
|
HD2
|
A:TYR31
|
3.5
|
29.6
|
1.0
|
|
HG3
|
A:LYS30
|
3.5
|
40.5
|
1.0
|
|
HG3
|
C:GLU165
|
3.5
|
37.4
|
1.0
|
|
O
|
C:HOH412
|
3.6
|
41.0
|
1.0
|
|
HB2
|
C:GLU165
|
3.6
|
33.1
|
1.0
|
|
CA
|
A:LYS30
|
3.6
|
26.2
|
1.0
|
|
N
|
C:GLU165
|
3.7
|
22.5
|
1.0
|
|
CB
|
C:ALA164
|
3.7
|
22.1
|
1.0
|
|
HA
|
C:ALA164
|
3.8
|
27.1
|
1.0
|
|
O
|
A:VAL29
|
3.9
|
24.0
|
1.0
|
|
C
|
A:LYS30
|
3.9
|
26.6
|
1.0
|
|
HB2
|
C:ALA164
|
4.0
|
26.5
|
1.0
|
|
HG2
|
A:LYS30
|
4.0
|
40.5
|
1.0
|
|
O
|
A:TYR31
|
4.0
|
28.4
|
1.0
|
|
CB
|
A:TYR31
|
4.1
|
26.9
|
1.0
|
|
CA
|
A:TYR31
|
4.1
|
24.2
|
1.0
|
|
CG
|
A:LYS30
|
4.1
|
33.7
|
1.0
|
|
CA
|
C:ALA164
|
4.2
|
22.6
|
1.0
|
|
CB
|
C:GLU165
|
4.3
|
27.6
|
1.0
|
|
CD2
|
A:TYR31
|
4.3
|
24.6
|
1.0
|
|
CG
|
C:GLU165
|
4.3
|
31.1
|
1.0
|
|
O
|
A:HOH976
|
4.4
|
34.1
|
1.0
|
|
CB
|
A:LYS30
|
4.4
|
31.5
|
1.0
|
|
H
|
C:ASP166
|
4.4
|
31.6
|
1.0
|
|
C
|
C:ALA164
|
4.4
|
25.3
|
1.0
|
|
HB3
|
C:ALA164
|
4.4
|
26.5
|
1.0
|
|
C
|
A:TYR31
|
4.6
|
27.5
|
1.0
|
|
CA
|
C:GLU165
|
4.6
|
24.9
|
1.0
|
|
N
|
A:LYS30
|
4.6
|
24.8
|
1.0
|
|
HB2
|
A:LYS30
|
4.7
|
37.9
|
1.0
|
|
CG
|
A:TYR31
|
4.7
|
22.6
|
1.0
|
|
C
|
A:VAL29
|
4.7
|
24.9
|
1.0
|
|
OE1
|
C:GLU165
|
4.7
|
36.2
|
1.0
|
|
O
|
C:HOH554
|
4.8
|
29.0
|
1.0
|
|
HB3
|
A:TYR31
|
4.9
|
32.4
|
1.0
|
|
HA
|
A:TYR31
|
5.0
|
29.1
|
1.0
|
|
HH21
|
A:ARG33
|
5.0
|
31.1
|
1.0
|
|
Chlorine binding site 2 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 2 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:31.9
occ:1.00
|
H
|
B:VAL297
|
2.4
|
27.8
|
1.0
|
|
H
|
C:THR249
|
2.8
|
31.9
|
1.0
|
|
O
|
C:HOH677
|
2.9
|
39.8
|
1.0
|
|
HA
|
C:GLU248
|
2.9
|
32.1
|
1.0
|
|
HG23
|
B:VAL297
|
3.0
|
29.0
|
1.0
|
|
HA
|
B:ASP296
|
3.1
|
29.7
|
1.0
|
|
O
|
C:HOH530
|
3.2
|
26.5
|
1.0
|
|
N
|
B:VAL297
|
3.3
|
23.2
|
1.0
|
|
HB
|
B:VAL297
|
3.4
|
28.4
|
1.0
|
|
OG1
|
C:THR249
|
3.5
|
28.7
|
1.0
|
|
N
|
C:THR249
|
3.6
|
26.6
|
1.0
|
|
HB2
|
C:GLU248
|
3.7
|
32.7
|
1.0
|
|
CG2
|
B:VAL297
|
3.7
|
24.1
|
1.0
|
|
HG1
|
C:THR249
|
3.8
|
34.5
|
1.0
|
|
CA
|
C:GLU248
|
3.8
|
26.7
|
1.0
|
|
O
|
C:HOH426
|
3.9
|
36.6
|
1.0
|
|
CA
|
B:ASP296
|
3.9
|
24.7
|
1.0
|
|
CB
|
B:VAL297
|
3.9
|
23.6
|
1.0
|
|
HG21
|
B:VAL297
|
4.0
|
29.0
|
1.0
|
|
O
|
B:ASN295
|
4.0
|
28.4
|
1.0
|
|
C
|
B:ASP296
|
4.1
|
25.4
|
1.0
|
|
O
|
B:HOH924
|
4.1
|
56.0
|
1.0
|
|
C
|
C:GLU248
|
4.2
|
25.6
|
1.0
|
|
CB
|
C:GLU248
|
4.2
|
27.2
|
1.0
|
|
CA
|
B:VAL297
|
4.2
|
20.8
|
1.0
|
|
HB
|
C:THR249
|
4.3
|
35.6
|
1.0
|
|
CB
|
C:THR249
|
4.4
|
29.7
|
1.0
|
|
H
|
B:CYS298
|
4.4
|
27.0
|
1.0
|
|
HB3
|
C:GLU248
|
4.4
|
32.7
|
1.0
|
|
OD1
|
B:ASP296
|
4.5
|
26.5
|
1.0
|
|
HG22
|
B:VAL297
|
4.5
|
29.0
|
1.0
|
|
CA
|
C:THR249
|
4.6
|
25.8
|
1.0
|
|
N
|
B:ASP296
|
4.6
|
23.9
|
1.0
|
|
C
|
B:ASN295
|
4.6
|
28.0
|
1.0
|
|
O
|
C:HOH549
|
4.7
|
38.0
|
1.0
|
|
O
|
C:PRO247
|
4.7
|
25.8
|
1.0
|
|
O
|
C:HOH598
|
4.7
|
29.3
|
1.0
|
|
HA
|
B:VAL297
|
4.9
|
25.0
|
1.0
|
|
N
|
C:GLU248
|
4.9
|
24.5
|
1.0
|
|
O
|
B:HOH836
|
4.9
|
37.8
|
1.0
|
|
HA
|
C:THR249
|
4.9
|
31.0
|
1.0
|
|
O
|
C:HOH664
|
5.0
|
47.5
|
1.0
|
|
HH12
|
B:ARG232
|
5.0
|
34.0
|
1.0
|
|
Chlorine binding site 3 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 3 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl303
b:31.8
occ:1.00
|
H
|
B:LEU229
|
2.4
|
31.0
|
1.0
|
|
HH12
|
C:ARG246
|
2.4
|
33.0
|
1.0
|
|
HH22
|
C:ARG246
|
2.7
|
33.2
|
1.0
|
|
HA3
|
B:GLY228
|
3.0
|
33.5
|
1.0
|
|
HG2
|
E:GLU137
|
3.0
|
34.5
|
1.0
|
|
HH22
|
E:ARG85
|
3.2
|
45.8
|
0.7
|
|
O
|
E:HOH799
|
3.2
|
36.2
|
1.0
|
|
N
|
B:LEU229
|
3.2
|
25.8
|
1.0
|
|
NH1
|
C:ARG246
|
3.2
|
27.5
|
1.0
|
|
O
|
E:HOH787
|
3.3
|
45.5
|
1.0
|
|
NH2
|
C:ARG246
|
3.4
|
27.7
|
1.0
|
|
HB3
|
B:LEU229
|
3.5
|
30.3
|
1.0
|
|
HB2
|
B:LEU229
|
3.5
|
30.3
|
1.0
|
|
CD
|
E:GLU137
|
3.5
|
32.3
|
1.0
|
|
OE2
|
E:GLU137
|
3.6
|
34.1
|
1.0
|
|
HH21
|
E:ARG85
|
3.6
|
45.8
|
0.7
|
|
HH21
|
E:ARG85
|
3.7
|
43.6
|
0.3
|
|
CG
|
E:GLU137
|
3.7
|
28.7
|
1.0
|
|
NH2
|
E:ARG85
|
3.7
|
38.1
|
0.7
|
|
HH22
|
E:ARG85
|
3.8
|
43.6
|
0.3
|
|
CA
|
B:GLY228
|
3.8
|
27.9
|
1.0
|
|
CZ
|
C:ARG246
|
3.8
|
26.9
|
1.0
|
|
CB
|
B:LEU229
|
3.9
|
25.2
|
1.0
|
|
HH11
|
C:ARG246
|
3.9
|
33.0
|
1.0
|
|
O
|
E:HOH823
|
3.9
|
46.7
|
1.0
|
|
OE1
|
E:GLU137
|
4.0
|
31.1
|
1.0
|
|
C
|
B:GLY228
|
4.0
|
24.4
|
1.0
|
|
NH2
|
E:ARG85
|
4.0
|
36.3
|
0.3
|
|
HA2
|
B:GLY228
|
4.1
|
33.5
|
1.0
|
|
HD21
|
E:LEU89
|
4.1
|
35.9
|
1.0
|
|
HG3
|
E:GLU137
|
4.1
|
34.5
|
1.0
|
|
HH21
|
C:ARG246
|
4.1
|
33.2
|
1.0
|
|
CA
|
B:LEU229
|
4.2
|
25.4
|
1.0
|
|
HH21
|
E:ARG140
|
4.5
|
36.8
|
1.0
|
|
HD22
|
E:LEU89
|
4.6
|
35.9
|
1.0
|
|
HA
|
B:LEU229
|
4.7
|
30.5
|
1.0
|
|
HD1
|
B:PHE230
|
4.7
|
30.7
|
1.0
|
|
HH
|
A:TYR470
|
4.7
|
29.6
|
1.0
|
|
O
|
B:ILE227
|
4.8
|
26.0
|
1.0
|
|
H
|
B:PHE230
|
4.8
|
26.6
|
1.0
|
|
CD2
|
E:LEU89
|
4.8
|
29.9
|
1.0
|
|
HB2
|
E:GLU137
|
4.9
|
32.2
|
1.0
|
|
CB
|
E:GLU137
|
4.9
|
26.8
|
1.0
|
|
CZ
|
E:ARG85
|
4.9
|
39.6
|
0.7
|
|
N
|
B:GLY228
|
5.0
|
27.5
|
1.0
|
|
Chlorine binding site 4 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 4 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl502
b:31.4
occ:1.00
|
H
|
E:VAL297
|
2.5
|
29.2
|
1.0
|
|
H
|
F:THR249
|
2.8
|
36.9
|
1.0
|
|
HA
|
F:GLU248
|
2.9
|
32.6
|
1.0
|
|
HG23
|
F:THR249
|
3.0
|
39.9
|
1.0
|
|
HA
|
E:ASP296
|
3.0
|
33.3
|
1.0
|
|
O
|
F:HOH515
|
3.1
|
27.7
|
1.0
|
|
HG23
|
E:VAL297
|
3.2
|
29.9
|
1.0
|
|
N
|
E:VAL297
|
3.3
|
24.3
|
1.0
|
|
HB
|
E:VAL297
|
3.4
|
29.4
|
1.0
|
|
N
|
F:THR249
|
3.5
|
30.7
|
1.0
|
|
HB2
|
F:GLU248
|
3.6
|
34.3
|
1.0
|
|
CA
|
F:GLU248
|
3.8
|
27.2
|
1.0
|
|
CA
|
E:ASP296
|
3.9
|
27.7
|
1.0
|
|
CG2
|
E:VAL297
|
3.9
|
24.9
|
1.0
|
|
CG2
|
F:THR249
|
4.0
|
33.2
|
1.0
|
|
CB
|
E:VAL297
|
4.0
|
24.5
|
1.0
|
|
O
|
E:ASN295
|
4.0
|
29.2
|
1.0
|
|
C
|
E:ASP296
|
4.1
|
25.4
|
1.0
|
|
CB
|
F:GLU248
|
4.1
|
28.6
|
1.0
|
|
C
|
F:GLU248
|
4.2
|
27.9
|
1.0
|
|
HG21
|
E:VAL297
|
4.2
|
29.9
|
1.0
|
|
OG1
|
F:THR249
|
4.2
|
34.9
|
1.0
|
|
H
|
E:CYS298
|
4.2
|
28.4
|
1.0
|
|
CA
|
E:VAL297
|
4.3
|
24.2
|
1.0
|
|
HG1
|
F:THR249
|
4.3
|
41.9
|
1.0
|
|
HB3
|
F:GLU248
|
4.3
|
34.3
|
1.0
|
|
HG21
|
F:THR249
|
4.3
|
39.9
|
1.0
|
|
OD1
|
E:ASP296
|
4.4
|
30.7
|
1.0
|
|
CB
|
F:THR249
|
4.5
|
31.0
|
1.0
|
|
O
|
F:HOH508
|
4.5
|
44.0
|
1.0
|
|
HG22
|
F:THR249
|
4.6
|
39.9
|
1.0
|
|
O
|
F:HOH546
|
4.6
|
31.8
|
1.0
|
|
CA
|
F:THR249
|
4.6
|
33.9
|
1.0
|
|
N
|
E:ASP296
|
4.6
|
29.5
|
1.0
|
|
C
|
E:ASN295
|
4.6
|
28.4
|
1.0
|
|
O
|
F:PRO247
|
4.7
|
26.0
|
1.0
|
|
HG22
|
E:VAL297
|
4.7
|
29.9
|
1.0
|
|
O
|
E:HOH855
|
4.8
|
41.2
|
1.0
|
|
HH12
|
E:ARG232
|
4.8
|
30.6
|
1.0
|
|
CB
|
E:ASP296
|
4.9
|
28.0
|
1.0
|
|
CG
|
E:ASP296
|
4.9
|
30.8
|
1.0
|
|
N
|
F:GLU248
|
4.9
|
24.5
|
1.0
|
|
N
|
E:CYS298
|
4.9
|
23.6
|
1.0
|
|
HA
|
E:VAL297
|
4.9
|
29.1
|
1.0
|
|
Chlorine binding site 5 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 5 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl303
b:32.8
occ:1.00
|
H
|
E:LEU229
|
2.3
|
33.7
|
1.0
|
|
HH12
|
F:ARG246
|
2.5
|
33.5
|
1.0
|
|
HH22
|
F:ARG246
|
2.6
|
37.2
|
1.0
|
|
HA3
|
E:GLY228
|
2.9
|
35.4
|
1.0
|
|
O
|
B:HOH849
|
3.1
|
40.9
|
1.0
|
|
HG2
|
B:GLU137
|
3.1
|
32.9
|
1.0
|
|
N
|
E:LEU229
|
3.1
|
28.0
|
1.0
|
|
HH22
|
B:ARG85
|
3.3
|
47.8
|
1.0
|
|
NH1
|
F:ARG246
|
3.3
|
27.9
|
1.0
|
|
NH2
|
F:ARG246
|
3.4
|
31.0
|
1.0
|
|
HB3
|
E:LEU229
|
3.4
|
32.9
|
1.0
|
|
HH21
|
B:ARG85
|
3.5
|
47.8
|
1.0
|
|
HB2
|
E:LEU229
|
3.5
|
32.9
|
1.0
|
|
CD
|
B:GLU137
|
3.6
|
32.9
|
1.0
|
|
OE2
|
B:GLU137
|
3.7
|
35.6
|
1.0
|
|
NH2
|
B:ARG85
|
3.7
|
39.8
|
1.0
|
|
CA
|
E:GLY228
|
3.7
|
29.5
|
1.0
|
|
O
|
B:HOH850
|
3.7
|
45.4
|
1.0
|
|
CG
|
B:GLU137
|
3.8
|
27.4
|
1.0
|
|
CZ
|
F:ARG246
|
3.8
|
31.7
|
1.0
|
|
CB
|
E:LEU229
|
3.8
|
27.4
|
1.0
|
|
C
|
E:GLY228
|
3.9
|
29.8
|
1.0
|
|
OE1
|
B:GLU137
|
3.9
|
30.8
|
1.0
|
|
HA2
|
E:GLY228
|
4.0
|
35.4
|
1.0
|
|
HD21
|
B:LEU89
|
4.0
|
35.8
|
1.0
|
|
HH11
|
F:ARG246
|
4.0
|
33.5
|
1.0
|
|
HH21
|
F:ARG246
|
4.1
|
37.2
|
1.0
|
|
CA
|
E:LEU229
|
4.1
|
30.2
|
1.0
|
|
HG3
|
B:GLU137
|
4.3
|
32.9
|
1.0
|
|
HD22
|
B:LEU89
|
4.5
|
35.8
|
1.0
|
|
HA
|
E:LEU229
|
4.6
|
36.3
|
1.0
|
|
HD1
|
E:PHE230
|
4.6
|
27.8
|
1.0
|
|
O
|
E:ILE227
|
4.7
|
25.6
|
1.0
|
|
H
|
E:PHE230
|
4.7
|
27.8
|
1.0
|
|
HH
|
D:TYR470
|
4.7
|
35.4
|
1.0
|
|
CD2
|
B:LEU89
|
4.7
|
29.8
|
1.0
|
|
HH21
|
B:ARG140
|
4.7
|
37.0
|
1.0
|
|
HB2
|
B:GLU137
|
4.8
|
30.7
|
1.0
|
|
N
|
E:GLY228
|
4.8
|
29.2
|
1.0
|
|
O
|
F:HOH625
|
4.9
|
45.0
|
1.0
|
|
O
|
E:HOH898
|
4.9
|
45.6
|
1.0
|
|
CB
|
B:GLU137
|
4.9
|
25.6
|
1.0
|
|
CZ
|
B:ARG85
|
5.0
|
40.8
|
1.0
|
|
Chlorine binding site 6 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 6 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl612
b:33.3
occ:1.00
|
H
|
G:TYR31
|
2.3
|
30.2
|
1.0
|
|
HB1
|
I:ALA164
|
2.8
|
34.1
|
1.0
|
|
H
|
I:GLU165
|
2.9
|
32.9
|
1.0
|
|
HA
|
G:LYS30
|
2.9
|
33.0
|
1.0
|
|
O
|
I:HOH606
|
3.0
|
32.3
|
1.0
|
|
O
|
G:HOH1050
|
3.2
|
31.2
|
1.0
|
|
N
|
G:TYR31
|
3.2
|
25.2
|
1.0
|
|
HB2
|
G:TYR31
|
3.4
|
33.5
|
1.0
|
|
HG3
|
G:LYS30
|
3.4
|
42.7
|
1.0
|
|
HD2
|
G:TYR31
|
3.5
|
31.4
|
1.0
|
|
HG3
|
I:GLU165
|
3.6
|
38.9
|
1.0
|
|
CB
|
I:ALA164
|
3.7
|
28.4
|
1.0
|
|
N
|
I:GLU165
|
3.7
|
27.4
|
1.0
|
|
HB2
|
I:GLU165
|
3.7
|
37.4
|
1.0
|
|
CA
|
G:LYS30
|
3.8
|
27.4
|
1.0
|
|
HA
|
I:ALA164
|
3.8
|
30.5
|
1.0
|
|
O
|
G:VAL29
|
3.9
|
26.7
|
1.0
|
|
HB2
|
I:ALA164
|
3.9
|
34.1
|
1.0
|
|
C
|
G:LYS30
|
4.0
|
25.8
|
1.0
|
|
O
|
G:TYR31
|
4.1
|
28.0
|
1.0
|
|
CB
|
G:TYR31
|
4.1
|
27.9
|
1.0
|
|
CA
|
G:TYR31
|
4.1
|
24.9
|
1.0
|
|
CA
|
I:ALA164
|
4.2
|
25.4
|
1.0
|
|
CD2
|
G:TYR31
|
4.2
|
26.1
|
1.0
|
|
O
|
G:HOH972
|
4.3
|
30.8
|
1.0
|
|
CG
|
G:LYS30
|
4.3
|
35.6
|
1.0
|
|
CG
|
I:GLU165
|
4.4
|
32.4
|
1.0
|
|
CB
|
I:GLU165
|
4.4
|
31.2
|
1.0
|
|
HB3
|
I:ALA164
|
4.4
|
34.1
|
1.0
|
|
H
|
I:ASP166
|
4.4
|
35.6
|
1.0
|
|
C
|
I:ALA164
|
4.4
|
28.0
|
1.0
|
|
O
|
I:HOH479
|
4.5
|
37.2
|
1.0
|
|
CB
|
G:LYS30
|
4.6
|
32.1
|
1.0
|
|
C
|
G:TYR31
|
4.6
|
27.4
|
1.0
|
|
CG
|
G:TYR31
|
4.6
|
24.2
|
1.0
|
|
CA
|
I:GLU165
|
4.6
|
31.4
|
1.0
|
|
HG2
|
G:LYS30
|
4.7
|
42.7
|
1.0
|
|
O
|
G:HOH829
|
4.7
|
38.9
|
1.0
|
|
C
|
G:VAL29
|
4.7
|
28.3
|
1.0
|
|
O
|
I:HOH542
|
4.7
|
27.9
|
1.0
|
|
N
|
G:LYS30
|
4.7
|
26.8
|
1.0
|
|
OE1
|
I:GLU165
|
4.9
|
42.2
|
1.0
|
|
HB2
|
G:LYS30
|
4.9
|
38.5
|
1.0
|
|
HB3
|
G:TYR31
|
4.9
|
33.5
|
1.0
|
|
HH21
|
G:ARG33
|
5.0
|
31.8
|
1.0
|
|
HA
|
G:TYR31
|
5.0
|
30.0
|
1.0
|
|
Chlorine binding site 7 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 7 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl502
b:35.9
occ:1.00
|
H
|
H:VAL297
|
2.5
|
36.4
|
1.0
|
|
H
|
I:THR249
|
2.7
|
35.6
|
1.0
|
|
O
|
I:HOH634
|
2.8
|
43.3
|
1.0
|
|
HA
|
I:GLU248
|
2.9
|
35.4
|
1.0
|
|
HG23
|
H:VAL297
|
2.9
|
34.1
|
1.0
|
|
HA
|
H:ASP296
|
3.1
|
35.2
|
1.0
|
|
O
|
I:HOH491
|
3.3
|
31.8
|
1.0
|
|
N
|
H:VAL297
|
3.3
|
30.3
|
1.0
|
|
N
|
I:THR249
|
3.4
|
29.7
|
1.0
|
|
HB
|
H:VAL297
|
3.5
|
33.8
|
1.0
|
|
OG1
|
I:THR249
|
3.5
|
33.0
|
1.0
|
|
HB2
|
I:GLU248
|
3.6
|
35.7
|
1.0
|
|
CA
|
I:GLU248
|
3.7
|
29.4
|
1.0
|
|
CG2
|
H:VAL297
|
3.7
|
28.4
|
1.0
|
|
O
|
H:HOH655
|
3.8
|
42.0
|
1.0
|
|
HG21
|
H:VAL297
|
4.0
|
34.1
|
1.0
|
|
CB
|
H:VAL297
|
4.0
|
28.1
|
1.0
|
|
CA
|
H:ASP296
|
4.0
|
29.3
|
1.0
|
|
HG1
|
I:THR249
|
4.0
|
39.6
|
1.0
|
|
C
|
I:GLU248
|
4.1
|
30.8
|
1.0
|
|
O
|
H:ASN295
|
4.1
|
30.1
|
1.0
|
|
CB
|
I:GLU248
|
4.1
|
29.7
|
1.0
|
|
C
|
H:ASP296
|
4.2
|
28.6
|
1.0
|
|
HB
|
I:THR249
|
4.2
|
41.3
|
1.0
|
|
CA
|
H:VAL297
|
4.3
|
29.8
|
1.0
|
|
CB
|
I:THR249
|
4.3
|
34.4
|
1.0
|
|
H
|
H:CYS298
|
4.4
|
36.7
|
1.0
|
|
HB3
|
I:GLU248
|
4.4
|
35.7
|
1.0
|
|
OD1
|
H:ASP296
|
4.4
|
33.1
|
1.0
|
|
CA
|
I:THR249
|
4.4
|
31.7
|
1.0
|
|
HG22
|
H:VAL297
|
4.5
|
34.1
|
1.0
|
|
O
|
I:HOH563
|
4.6
|
29.9
|
1.0
|
|
C
|
H:ASN295
|
4.7
|
34.5
|
1.0
|
|
N
|
H:ASP296
|
4.7
|
31.1
|
1.0
|
|
O
|
I:HOH463
|
4.8
|
38.5
|
1.0
|
|
O
|
I:PRO247
|
4.8
|
29.1
|
1.0
|
|
HA
|
I:THR249
|
4.8
|
38.0
|
1.0
|
|
N
|
I:GLU248
|
4.8
|
26.9
|
1.0
|
|
HA
|
H:VAL297
|
4.9
|
35.7
|
1.0
|
|
Chlorine binding site 8 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 8 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl303
b:36.9
occ:1.00
|
H
|
H:LEU229
|
2.2
|
34.3
|
1.0
|
|
HH12
|
I:ARG246
|
2.5
|
36.5
|
1.0
|
|
HH22
|
I:ARG246
|
2.7
|
39.4
|
1.0
|
|
HA3
|
H:GLY228
|
2.9
|
37.0
|
1.0
|
|
HG2
|
K:GLU137
|
3.0
|
41.5
|
1.0
|
|
N
|
H:LEU229
|
3.1
|
28.6
|
1.0
|
|
NH1
|
I:ARG246
|
3.3
|
30.4
|
1.0
|
|
HB3
|
H:LEU229
|
3.4
|
36.5
|
1.0
|
|
NH2
|
I:ARG246
|
3.4
|
32.8
|
1.0
|
|
CD
|
K:GLU137
|
3.5
|
33.9
|
1.0
|
|
OE2
|
K:GLU137
|
3.6
|
40.4
|
1.0
|
|
HB2
|
H:LEU229
|
3.6
|
36.5
|
1.0
|
|
CA
|
H:GLY228
|
3.7
|
30.8
|
1.0
|
|
CG
|
K:GLU137
|
3.7
|
34.6
|
1.0
|
|
CZ
|
I:ARG246
|
3.8
|
32.1
|
1.0
|
|
OE1
|
K:GLU137
|
3.9
|
33.8
|
1.0
|
|
CB
|
H:LEU229
|
3.9
|
30.4
|
1.0
|
|
C
|
H:GLY228
|
3.9
|
30.9
|
1.0
|
|
HH21
|
K:ARG85
|
3.9
|
62.6
|
1.0
|
|
HA2
|
H:GLY228
|
4.0
|
37.0
|
1.0
|
|
HH11
|
I:ARG246
|
4.0
|
36.5
|
1.0
|
|
HH22
|
K:ARG85
|
4.0
|
62.6
|
1.0
|
|
CA
|
H:LEU229
|
4.1
|
26.5
|
1.0
|
|
HH21
|
I:ARG246
|
4.1
|
39.4
|
1.0
|
|
HG3
|
K:GLU137
|
4.2
|
41.5
|
1.0
|
|
HD21
|
K:LEU89
|
4.2
|
41.2
|
1.0
|
|
NH2
|
K:ARG85
|
4.3
|
52.1
|
1.0
|
|
HD1
|
H:PHE230
|
4.5
|
33.4
|
1.0
|
|
HH
|
G:TYR470
|
4.5
|
35.4
|
1.0
|
|
H
|
H:PHE230
|
4.6
|
31.3
|
1.0
|
|
O
|
H:ILE227
|
4.6
|
29.4
|
1.0
|
|
HA
|
H:LEU229
|
4.6
|
31.8
|
1.0
|
|
HD22
|
K:LEU89
|
4.6
|
41.2
|
1.0
|
|
HH21
|
K:ARG140
|
4.6
|
39.3
|
1.0
|
|
HB2
|
K:GLU137
|
4.7
|
34.8
|
1.0
|
|
N
|
H:GLY228
|
4.8
|
30.1
|
1.0
|
|
CB
|
K:GLU137
|
4.9
|
29.0
|
1.0
|
|
CD2
|
K:LEU89
|
4.9
|
34.3
|
1.0
|
|
Chlorine binding site 9 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 9 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl302
b:37.6
occ:1.00
|
H
|
K:LEU229
|
2.4
|
36.8
|
1.0
|
|
HH12
|
L:ARG246
|
2.5
|
37.1
|
1.0
|
|
HH22
|
L:ARG246
|
2.7
|
41.9
|
1.0
|
|
HA3
|
K:GLY228
|
2.9
|
42.5
|
1.0
|
|
O
|
K:HOH818
|
3.0
|
43.8
|
1.0
|
|
HG2
|
H:GLU137
|
3.1
|
43.0
|
1.0
|
|
N
|
K:LEU229
|
3.2
|
30.7
|
1.0
|
|
NH1
|
L:ARG246
|
3.3
|
30.9
|
1.0
|
|
HH22
|
H:ARG85
|
3.4
|
60.9
|
1.0
|
|
NH2
|
L:ARG246
|
3.5
|
34.9
|
1.0
|
|
CD
|
H:GLU137
|
3.5
|
37.1
|
1.0
|
|
HB3
|
K:LEU229
|
3.5
|
36.3
|
1.0
|
|
HH21
|
H:ARG85
|
3.5
|
60.9
|
1.0
|
|
OE2
|
H:GLU137
|
3.5
|
41.7
|
1.0
|
|
HB2
|
K:LEU229
|
3.7
|
36.3
|
1.0
|
|
CA
|
K:GLY228
|
3.7
|
35.4
|
1.0
|
|
CG
|
H:GLU137
|
3.7
|
35.8
|
1.0
|
|
NH2
|
H:ARG85
|
3.8
|
50.7
|
1.0
|
|
CZ
|
L:ARG246
|
3.9
|
35.3
|
1.0
|
|
OE1
|
H:GLU137
|
3.9
|
38.0
|
1.0
|
|
HH11
|
L:ARG246
|
4.0
|
37.1
|
1.0
|
|
HA2
|
K:GLY228
|
4.0
|
42.5
|
1.0
|
|
C
|
K:GLY228
|
4.0
|
32.7
|
1.0
|
|
CB
|
K:LEU229
|
4.0
|
30.2
|
1.0
|
|
HD21
|
H:LEU89
|
4.1
|
51.4
|
1.0
|
|
HH21
|
L:ARG246
|
4.2
|
41.9
|
1.0
|
|
CA
|
K:LEU229
|
4.2
|
30.3
|
1.0
|
|
HG3
|
H:GLU137
|
4.3
|
43.0
|
1.0
|
|
HD22
|
H:LEU89
|
4.5
|
51.4
|
1.0
|
|
HH21
|
H:ARG140
|
4.5
|
45.9
|
1.0
|
|
HH
|
J:TYR470
|
4.6
|
41.4
|
1.0
|
|
O
|
K:ILE227
|
4.7
|
30.8
|
1.0
|
|
HB2
|
H:GLU137
|
4.7
|
40.8
|
1.0
|
|
H
|
K:PHE230
|
4.7
|
36.5
|
1.0
|
|
HD1
|
K:PHE230
|
4.7
|
32.7
|
1.0
|
|
HA
|
K:LEU229
|
4.8
|
36.4
|
1.0
|
|
CD2
|
H:LEU89
|
4.8
|
42.8
|
1.0
|
|
CB
|
H:GLU137
|
4.9
|
34.0
|
1.0
|
|
N
|
K:GLY228
|
4.9
|
33.9
|
1.0
|
|
Chlorine binding site 10 out
of 10 in 9qm5
Go back to
Chlorine Binding Sites List in 9qm5
Chlorine binding site 10 out
of 10 in the Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Krypton-Pressurized Methyl-Coenzyme M Reductase of An Anme-2C Isolated From A Microbial Enrichment within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl303
b:37.2
occ:1.00
|
H
|
L:THR249
|
2.6
|
37.5
|
1.0
|
|
H
|
K:VAL297
|
2.6
|
40.4
|
1.0
|
|
O
|
L:HOH617
|
2.7
|
44.5
|
1.0
|
|
HA
|
L:GLU248
|
2.9
|
35.5
|
1.0
|
|
HG23
|
K:VAL297
|
3.0
|
35.9
|
1.0
|
|
O
|
L:HOH502
|
3.2
|
31.6
|
1.0
|
|
HA
|
K:ASP296
|
3.3
|
40.4
|
1.0
|
|
N
|
L:THR249
|
3.3
|
31.2
|
1.0
|
|
OG1
|
L:THR249
|
3.5
|
34.9
|
1.0
|
|
HB
|
K:VAL297
|
3.5
|
34.6
|
1.0
|
|
N
|
K:VAL297
|
3.5
|
33.6
|
1.0
|
|
HB2
|
L:GLU248
|
3.6
|
37.6
|
1.0
|
|
CA
|
L:GLU248
|
3.7
|
29.6
|
1.0
|
|
CG2
|
K:VAL297
|
3.8
|
29.9
|
1.0
|
|
O
|
K:HOH870
|
4.0
|
48.9
|
1.0
|
|
HG21
|
K:VAL297
|
4.0
|
35.9
|
1.0
|
|
CB
|
K:VAL297
|
4.0
|
28.8
|
1.0
|
|
HG1
|
L:THR249
|
4.0
|
42.0
|
1.0
|
|
C
|
L:GLU248
|
4.0
|
31.8
|
1.0
|
|
O
|
K:ASN295
|
4.1
|
34.7
|
1.0
|
|
CB
|
L:GLU248
|
4.1
|
31.3
|
1.0
|
|
HB
|
L:THR249
|
4.1
|
42.7
|
1.0
|
|
CA
|
K:ASP296
|
4.1
|
33.6
|
1.0
|
|
CB
|
L:THR249
|
4.2
|
35.6
|
1.0
|
|
HB3
|
L:GLU248
|
4.2
|
37.6
|
1.0
|
|
C
|
K:ASP296
|
4.3
|
32.4
|
1.0
|
|
CA
|
L:THR249
|
4.4
|
30.7
|
1.0
|
|
CA
|
K:VAL297
|
4.4
|
31.7
|
1.0
|
|
H
|
K:CYS298
|
4.5
|
36.2
|
1.0
|
|
O
|
L:HOH534
|
4.6
|
42.3
|
1.0
|
|
O
|
L:HOH490
|
4.6
|
34.0
|
1.0
|
|
HG22
|
K:VAL297
|
4.6
|
35.9
|
1.0
|
|
OD1
|
K:ASP296
|
4.6
|
34.5
|
1.0
|
|
HA
|
L:THR249
|
4.8
|
36.9
|
1.0
|
|
C
|
K:ASN295
|
4.8
|
35.6
|
1.0
|
|
O
|
L:PRO247
|
4.8
|
28.5
|
1.0
|
|
N
|
K:ASP296
|
4.9
|
34.8
|
1.0
|
|
N
|
L:GLU248
|
4.9
|
28.6
|
1.0
|
|
Reference:
M.-C.Mueller,
M.Wissink,
P.Mukherjee,
N.Von Possel,
R.Laso-Perez,
S.Engilberge,
P.Carpentier,
J.Kahnt,
G.Wegener,
C.U.Welte,
T.Wagner.
Atomic Resolution Structures of Key Enzyme Mcr in Anaerobic Methanotrophy Reveal Novel and Extensive Post-Translational Modifications. To Be Published.
Page generated: Mon Aug 4 21:14:36 2025
|
