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Chlorine in PDB 1ckp: Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B

Enzymatic activity of Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B

All present enzymatic activity of Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B:
2.7.1.37;

Protein crystallography data

The structure of Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B, PDB code: 1ckp was solved by N.S.Gray, A.M.W.H.Thunnissen, P.G.Schultz, S.H.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.00 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.550, 71.350, 72.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 26

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B (pdb code 1ckp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B, PDB code: 1ckp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1ckp

Go back to Chlorine Binding Sites List in 1ckp
Chlorine binding site 1 out of 2 in the Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl299

b:48.0
occ:0.65
CL1 A:PVB299 0.0 48.0 0.7
C5A A:PVB299 1.7 44.6 0.7
C3A A:PVB299 1.9 42.8 0.3
C4A A:PVB299 2.7 43.4 0.7
C6A A:PVB299 2.7 43.3 0.7
C2A A:PVB299 2.8 41.9 0.3
C4A A:PVB299 2.9 43.7 0.3
OD2 A:ASP86 3.1 32.1 1.0
CG A:ASP86 3.1 23.8 1.0
OD1 A:ASP86 3.3 31.7 1.0
N A:ASP86 3.5 25.2 1.0
CB A:ASP86 3.7 22.4 1.0
CD A:LYS89 3.9 43.9 1.0
C3A A:PVB299 4.0 43.4 0.7
C1A A:PVB299 4.0 41.0 0.7
C1A A:PVB299 4.1 40.8 0.3
C5A A:PVB299 4.1 43.9 0.3
CB A:LYS89 4.2 32.5 1.0
CA A:ASP86 4.2 22.1 1.0
C A:GLN85 4.3 25.2 1.0
CA A:GLN85 4.3 27.2 1.0
C2A A:PVB299 4.5 41.6 0.7
C6A A:PVB299 4.6 42.2 0.3
CG A:LYS89 4.7 40.8 1.0
CG A:GLN85 4.7 39.6 1.0
O A:HOH341 4.9 40.6 1.0

Chlorine binding site 2 out of 2 in 1ckp

Go back to Chlorine Binding Sites List in 1ckp
Chlorine binding site 2 out of 2 in the Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Cyclin Dependent Kinase 2 Complexed with the Inhibitor Purvalanol B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl299

b:47.1
occ:0.35
CL1 A:PVB299 0.0 47.1 0.3
C5A A:PVB299 1.7 43.9 0.3
C3A A:PVB299 1.8 43.4 0.7
C6A A:PVB299 2.7 42.2 0.3
C4A A:PVB299 2.7 43.7 0.3
C2A A:PVB299 2.7 41.6 0.7
C4A A:PVB299 2.9 43.4 0.7
O A:HOH354 3.3 34.2 1.0
O A:HOH339 3.5 22.5 1.0
O A:HIS84 3.8 28.2 1.0
C1A A:PVB299 4.0 40.8 0.3
C3A A:PVB299 4.0 42.8 0.3
C1A A:PVB299 4.1 41.0 0.7
CD1 A:ILE10 4.1 40.7 1.0
C5A A:PVB299 4.1 44.6 0.7
CZ A:PHE82 4.5 14.2 1.0
C2A A:PVB299 4.5 41.9 0.3
O A:HOH341 4.6 40.6 1.0
C6A A:PVB299 4.6 43.3 0.7
OE2 A:GLU8 4.7 62.6 1.0
C A:HIS84 4.7 27.8 1.0
CE1 A:PHE82 5.0 15.3 1.0
CG2 A:ILE10 5.0 34.5 1.0

Reference:

N.S.Gray, L.Wodicka, A.M.Thunnissen, T.C.Norman, S.Kwon, F.H.Espinoza, D.O.Morgan, G.Barnes, S.Leclerc, L.Meijer, S.H.Kim, D.J.Lockhart, P.G.Schultz. Exploiting Chemical Libraries, Structure, and Genomics in the Search For Kinase Inhibitors. Science V. 281 533 1998.
ISSN: ISSN 0036-8075
PubMed: 9677190
DOI: 10.1126/SCIENCE.281.5376.533
Page generated: Thu Jul 10 16:31:37 2025

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