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Chlorine in PDB 1d2w: N-Terminal Domain Core Methionine Mutation

Enzymatic activity of N-Terminal Domain Core Methionine Mutation

All present enzymatic activity of N-Terminal Domain Core Methionine Mutation:
3.2.1.17;

Protein crystallography data

The structure of N-Terminal Domain Core Methionine Mutation, PDB code: 1d2w was solved by N.C.Gassner, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.89
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.930, 60.930, 97.410, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the N-Terminal Domain Core Methionine Mutation (pdb code 1d2w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the N-Terminal Domain Core Methionine Mutation, PDB code: 1d2w:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1d2w

Go back to Chlorine Binding Sites List in 1d2w
Chlorine binding site 1 out of 2 in the N-Terminal Domain Core Methionine Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of N-Terminal Domain Core Methionine Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl173

b:26.1
occ:1.00
O A:HOH209 3.2 26.1 1.0
N A:ASN144 3.3 1.9 1.0
N A:ARG145 3.4 8.4 1.0
C A:THR142 3.4 18.5 1.0
CA A:THR142 3.5 8.4 1.0
CB A:THR142 3.6 23.2 1.0
CB A:ASN144 3.8 5.1 1.0
O A:THR142 3.8 7.1 1.0
N A:PRO143 3.8 9.6 1.0
CA A:ASN144 3.9 9.8 1.0
CB A:ARG145 4.0 3.0 1.0
C A:ASN144 4.2 17.3 1.0
CD A:PRO143 4.2 8.8 1.0
C A:PRO143 4.2 18.4 1.0
CG2 A:THR142 4.3 15.9 1.0
CA A:ARG145 4.3 5.1 1.0
CG A:ASN144 4.6 33.2 1.0
CA A:PRO143 4.6 16.2 1.0
ND2 A:ASN144 4.6 17.3 1.0
O A:HOH230 4.6 32.3 1.0
OG1 A:THR142 4.7 10.9 1.0
N A:THR142 5.0 10.3 1.0

Chlorine binding site 2 out of 2 in 1d2w

Go back to Chlorine Binding Sites List in 1d2w
Chlorine binding site 2 out of 2 in the N-Terminal Domain Core Methionine Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of N-Terminal Domain Core Methionine Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl178

b:37.8
occ:0.50
O A:HOH215 3.1 20.1 1.0
O A:HOH200 3.4 29.6 1.0
O A:HOH182 3.5 17.1 1.0
O A:HOH246 4.2 55.0 1.0
CE1 A:HIS31 4.2 15.3 1.0
CB A:ALA49 4.3 8.9 1.0
NE2 A:HIS31 4.4 15.2 1.0
O A:HOH282 4.4 28.5 1.0
NE2 A:GLN69 4.5 17.0 1.0
CA A:ALA49 4.5 12.3 1.0
O A:HOH202 4.9 45.2 1.0

Reference:

N.C.Gassner, B.W.Matthews. Use of Differentially Substituted Selenomethionine Proteins in X-Ray Structure Determination. Acta Crystallogr.,Sect.D V. 55 1967 1999.
ISSN: ISSN 0907-4449
PubMed: 10666571
DOI: 10.1006/JMBI.1999.3220
Page generated: Thu Jul 10 16:37:14 2025

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