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Chlorine in PDB 1dpw: Structure of Hen Egg-White Lysozyme in Complex with Mpd

Enzymatic activity of Structure of Hen Egg-White Lysozyme in Complex with Mpd

All present enzymatic activity of Structure of Hen Egg-White Lysozyme in Complex with Mpd:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg-White Lysozyme in Complex with Mpd, PDB code: 1dpw was solved by M.S.Weiss, G.J.Palm, R.Hilgenfeld, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.64
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.510, 77.510, 37.420, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hen Egg-White Lysozyme in Complex with Mpd (pdb code 1dpw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Hen Egg-White Lysozyme in Complex with Mpd, PDB code: 1dpw:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1dpw

Go back to Chlorine Binding Sites List in 1dpw
Chlorine binding site 1 out of 2 in the Structure of Hen Egg-White Lysozyme in Complex with Mpd


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hen Egg-White Lysozyme in Complex with Mpd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl300

b:24.1
occ:1.00
OH A:TYR23 3.0 12.7 1.0
O A:HOH576 3.0 40.2 1.0
O A:HOH522 3.3 17.1 1.0
CE2 A:TYR23 3.7 12.2 1.0
CZ A:TYR23 3.7 11.8 1.0
CA A:GLY104 4.2 12.7 1.0
O A:ARG21 4.5 13.6 1.0
N A:GLY104 4.8 13.9 1.0
CE1 A:TYR23 4.9 11.5 1.0
CD2 A:TYR23 4.9 12.0 1.0

Chlorine binding site 2 out of 2 in 1dpw

Go back to Chlorine Binding Sites List in 1dpw
Chlorine binding site 2 out of 2 in the Structure of Hen Egg-White Lysozyme in Complex with Mpd


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hen Egg-White Lysozyme in Complex with Mpd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:26.9
occ:1.00
N A:GLY26 3.0 13.1 1.0
OG A:SER24 3.0 14.9 1.0
CA A:GLY26 3.4 13.2 1.0
CB A:SER24 3.5 16.4 1.0
CA A:GLN121 3.5 17.6 1.0
CD1 A:ILE124 3.8 25.0 1.0
N A:GLN121 3.9 17.2 1.0
CB A:GLN121 4.0 21.7 1.0
N A:LEU25 4.0 12.3 1.0
C A:LEU25 4.1 12.9 1.0
C A:SER24 4.1 12.9 1.0
CG A:GLN121 4.3 28.4 1.0
CG1 A:ILE124 4.3 21.2 1.0
C A:VAL120 4.3 16.8 1.0
O A:VAL120 4.3 16.7 1.0
CG2 A:VAL120 4.4 16.5 1.0
CA A:SER24 4.4 12.0 1.0
C A:GLY26 4.5 12.4 1.0
CA A:LEU25 4.5 12.7 1.0
O A:SER24 4.6 12.9 1.0
N A:ASN27 4.6 11.2 1.0
O A:HOH604 4.6 20.9 1.0
C A:GLN121 4.7 17.9 1.0
CB A:LEU25 4.9 12.6 1.0
O A:GLN121 4.9 19.1 1.0
O A:HOH600 4.9 20.1 1.0

Reference:

M.S.Weiss, G.J.Palm, R.Hilgenfeld. Crystallization, Structure Solution and Refinement of Hen Egg-White Lysozyme at pH 8.0 in the Presence of Mpd. Acta Crystallogr.,Sect.D V. 56 952 2000.
ISSN: ISSN 0907-4449
PubMed: 10944331
DOI: 10.1107/S0907444900006685
Page generated: Fri Jul 19 21:37:33 2024

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