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Chlorine in PDB 1dyd: Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme

Enzymatic activity of Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme

All present enzymatic activity of Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme, PDB code: 1dyd was solved by X.Zhang, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.200, 61.200, 96.200, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme (pdb code 1dyd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme, PDB code: 1dyd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1dyd

Go back to Chlorine Binding Sites List in 1dyd
Chlorine binding site 1 out of 2 in the Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl173

b:43.1
occ:1.00
O A:HOH936 3.0 37.1 1.0
N A:ARG145 3.2 13.9 1.0
N A:ASN144 3.4 7.6 1.0
C A:THR142 3.5 17.9 1.0
CA A:THR142 3.6 7.2 1.0
CB A:ASN144 3.6 13.9 1.0
CB A:THR142 3.7 22.1 1.0
O A:THR142 3.7 17.0 1.0
CA A:ASN144 3.9 14.7 1.0
CB A:ARG145 3.9 19.3 1.0
N A:PRO143 4.0 26.2 1.0
C A:ASN144 4.1 20.4 1.0
CA A:ARG145 4.1 18.4 1.0
C A:PRO143 4.3 26.5 1.0
O A:HOH957 4.3 43.5 1.0
CG2 A:THR142 4.4 13.1 1.0
CD A:PRO143 4.4 16.3 1.0
CG A:ASN144 4.6 36.7 1.0
CA A:PRO143 4.7 11.5 1.0
ND2 A:ASN144 4.7 17.0 1.0
O A:HOH964 4.8 45.0 1.0
OG1 A:THR142 4.9 20.9 1.0

Chlorine binding site 2 out of 2 in 1dyd

Go back to Chlorine Binding Sites List in 1dyd
Chlorine binding site 2 out of 2 in the Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Determination of Alpha-Helix Propensity Within the Context of A Folded Protein: Sites 44 and 131 in Bacteriophage T4 Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl178

b:33.7
occ:0.50
O A:HOH942 3.0 19.9 1.0
C A:LYS135 3.6 21.8 1.0
CA A:LYS135 3.8 18.9 1.0
N A:SER136 3.8 11.0 1.0
O A:LYS135 3.9 19.9 1.0
CB A:LYS135 4.1 24.1 1.0
O A:HOH1008 4.2 53.7 1.0
OD1 A:ASN140 4.3 27.5 1.0
CA A:SER136 4.5 18.8 1.0
C A:SER136 4.7 28.1 1.0
CG A:LYS135 4.7 18.9 1.0
O A:SER136 4.8 18.8 1.0

Reference:

M.Blaber, X.J.Zhang, J.D.Lindstrom, S.D.Pepiot, W.A.Baase, B.W.Matthews. Determination of Alpha-Helix Propensity Within the Context of A Folded Protein. Sites 44 and 131 in Bacteriophage T4 Lysozyme. J.Mol.Biol. V. 235 600 1994.
ISSN: ISSN 0022-2836
PubMed: 8289284
DOI: 10.1006/JMBI.1994.1016
Page generated: Thu Jul 10 16:42:43 2025

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