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Chlorine in PDB 1jri: The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit.

Protein crystallography data

The structure of The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit., PDB code: 1jri was solved by C.Mura, D.Eisenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.95 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.371, 114.698, 238.600, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 29.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit. (pdb code 1jri). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit., PDB code: 1jri:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1jri

Go back to Chlorine Binding Sites List in 1jri
Chlorine binding site 1 out of 3 in the The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:60.5
occ:1.00
OG B:SER21 3.8 54.5 1.0
O B:ILE79 4.4 42.2 1.0
O C:THR68 4.7 41.1 1.0
CB B:SER21 4.7 41.8 1.0
C B:SER80 4.7 30.5 1.0
N B:ARG81 4.8 31.8 1.0
CA B:SER80 4.8 34.3 1.0
O B:HOH205 4.9 31.1 1.0
CG2 C:THR68 4.9 27.4 1.0
CD B:ARG81 4.9 49.2 1.0

Chlorine binding site 2 out of 3 in 1jri

Go back to Chlorine Binding Sites List in 1jri
Chlorine binding site 2 out of 3 in the The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl203

b:73.0
occ:1.00
CG2 G:THR68 3.9 30.1 1.0
CB G:LEU70 4.3 38.9 1.0
O G:THR68 4.4 40.4 1.0
CG F:ARG81 4.4 48.7 1.0
OG F:SER21 4.4 39.8 1.0
N G:LEU70 4.4 35.9 1.0
O F:ILE79 4.5 40.9 1.0
NE F:ARG81 4.5 62.5 1.0
C G:VAL69 4.7 37.5 1.0
CD2 F:LEU18 4.7 28.9 1.0
CA G:VAL69 4.8 40.5 1.0
C G:THR68 4.9 41.2 1.0
O F:ALA17 4.9 38.2 1.0
CA G:LEU70 4.9 34.2 1.0

Chlorine binding site 3 out of 3 in 1jri

Go back to Chlorine Binding Sites List in 1jri
Chlorine binding site 3 out of 3 in the The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of An Sm-Like Archaeal Protein with Two Heptamers in the Asymmetric Unit. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl201

b:52.0
occ:1.00
OG L:SER21 3.5 64.6 1.0
CG L:ARG81 4.0 71.7 1.0
O M:THR68 4.0 37.1 1.0
O L:ALA17 4.1 42.7 1.0
CZ L:ARG81 4.3 79.9 1.0
N L:ARG81 4.3 46.6 1.0
O L:ILE79 4.3 31.4 1.0
NE L:ARG81 4.4 68.8 1.0
CA L:SER80 4.4 33.8 1.0
C L:SER80 4.4 37.5 1.0
NH1 L:ARG81 4.5 80.5 1.0
NH2 L:ARG81 4.5 74.0 1.0
CG2 M:THR68 4.6 6.9 1.0
CB L:SER21 4.6 56.2 1.0
C L:ALA17 4.8 35.7 1.0
C L:ILE79 4.8 29.2 1.0
CB L:ALA17 4.8 34.8 1.0
C M:THR68 4.8 27.8 1.0
CG2 L:ILE79 4.8 19.7 1.0
CD L:ARG81 4.8 67.1 1.0
N L:SER80 4.8 31.7 1.0
CA L:ARG81 5.0 48.5 1.0

Reference:

C.Mura, A.Kozhukhovsky, M.Gingery, M.Phillips, D.Eisenberg. The Oligomerization and Ligand-Binding Properties of Sm-Like Archaeal Proteins (Smaps) Protein Sci. V. 12 832 2003.
ISSN: ISSN 0961-8368
PubMed: 12649441
DOI: 10.1110/PS.0224703
Page generated: Thu Jul 10 17:36:05 2025

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