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Chlorine in PDB 1lcu: Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution

Protein crystallography data

The structure of Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution, PDB code: 1lcu was solved by M.R.Bubb, L.Govindasamy, E.G.Yarmola, S.M.Vorobiev, S.C.Almo, T.Somasundaram, M.S.Chapman, M.Agbandje-Mckenna, R.Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 101.456, 103.029, 126.958, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 26.6

Other elements in 1lcu:

The structure of Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution (pdb code 1lcu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution, PDB code: 1lcu:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1lcu

Go back to Chlorine Binding Sites List in 1lcu
Chlorine binding site 1 out of 3 in the Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:9.8
occ:1.00
NH2 A:ARG216 3.1 63.8 1.0
O A:HOH524 3.1 35.3 1.0
NH1 A:ARG193 3.5 41.6 1.0
NH1 A:ARG216 4.0 63.3 1.0
CZ A:ARG216 4.0 63.3 1.0
CD A:ARG193 4.4 38.1 1.0
CZ A:ARG193 4.6 41.1 1.0
CE1 A:TYR79 4.8 38.2 1.0
NE A:ARG193 5.0 39.9 1.0

Chlorine binding site 2 out of 3 in 1lcu

Go back to Chlorine Binding Sites List in 1lcu
Chlorine binding site 2 out of 3 in the Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl512

b:10.6
occ:1.00
NH1 A:ARG157 3.4 46.6 1.0
NZ A:LYS338 4.3 65.2 1.0
CZ A:ARG157 4.4 44.9 1.0
NH2 A:ARG157 4.6 45.5 1.0
CE A:LYS338 4.8 65.1 1.0

Chlorine binding site 3 out of 3 in 1lcu

Go back to Chlorine Binding Sites List in 1lcu
Chlorine binding site 3 out of 3 in the Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl507

b:9.8
occ:1.00
NH1 B:ARG1216 3.5 70.9 1.0
NH2 B:ARG1216 3.5 69.7 1.0
CZ B:ARG1216 3.9 70.5 1.0
CD B:ARG1193 4.4 42.4 1.0
CE1 B:TYR1079 4.5 28.8 1.0
NH1 B:ARG1193 4.7 42.1 1.0
CD1 B:TYR1079 4.8 30.1 1.0

Reference:

M.R.Bubb, L.Govindasamy, E.G.Yarmola, S.M.Vorobiev, S.C.Almo, T.Somasundaram, M.S.Chapman, M.Agbandje-Mckenna, R.Mckenna. Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure at 3.5-A Resolution. J.Biol.Chem. V. 277 20999 2002.
ISSN: ISSN 0021-9258
PubMed: 11932258
DOI: 10.1074/JBC.M201371200
Page generated: Fri Jul 19 23:48:07 2024

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