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Chlorine in PDB 1oge: The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate

Protein crystallography data

The structure of The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate, PDB code: 1oge was solved by M.-S.Kim, B.-H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.05
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 123.807, 108.556, 83.532, 90.00, 128.72, 90.00
R / Rfree (%) 19.4 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate (pdb code 1oge). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate, PDB code: 1oge:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1oge

Go back to Chlorine Binding Sites List in 1oge
Chlorine binding site 1 out of 2 in the The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1132

b:44.3
occ:1.00
O A:HOH2002 3.3 31.8 1.0
NZ A:LYS2 3.3 32.8 1.0
CD A:LYS2 3.7 37.6 1.0
CE A:LYS2 3.8 36.5 1.0
O A:HIS4 4.0 38.5 1.0
CA A:GLY5 4.3 35.7 1.0
CG A:LYS2 4.6 39.2 1.0
CB A:ALA12 4.6 24.7 1.0
C A:HIS4 4.8 39.7 1.0
N A:ILE6 4.9 33.3 1.0
C A:GLY5 5.0 34.4 1.0

Chlorine binding site 2 out of 2 in 1oge

Go back to Chlorine Binding Sites List in 1oge
Chlorine binding site 2 out of 2 in the The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Bacillus Subtilis Rbsd Complexed with Ribose 5- Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1132

b:39.2
occ:1.00
O D:HOH2003 3.2 30.6 1.0
NZ D:LYS2 3.3 31.9 1.0
CD D:LYS2 3.6 35.7 1.0
CE D:LYS2 3.8 34.5 1.0
O D:HIS4 4.0 36.6 1.0
CA D:GLY5 4.3 33.6 1.0
CG D:LYS2 4.6 35.6 1.0
CB D:ALA12 4.6 22.2 1.0
C D:HIS4 4.7 37.5 1.0
N D:ILE6 4.9 31.5 1.0
N D:GLY5 4.9 35.1 1.0
C D:GLY5 5.0 32.4 1.0

Reference:

M.-S.Kim, J.Shin, W.Lee, H.-S.Lee, B.-H.Oh. Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with A Novel Folding Architecture J.Biol.Chem. V. 278 28173 2003.
ISSN: ISSN 0021-9258
PubMed: 12738765
DOI: 10.1074/JBC.M304523200
Page generated: Thu Jul 10 18:41:03 2025

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