Atomistry » Chlorine » PDB 1qvf-1rkq » 1r08
Atomistry »
  Chlorine »
    PDB 1qvf-1rkq »
      1r08 »

Chlorine in PDB 1r08: Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses

Protein crystallography data

The structure of Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses, PDB code: 1r08 was solved by J.Badger, T.J.Smith, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 3.00
Space group P 21 3 2
Cell size a, b, c (Å), α, β, γ (°) 445.100, 445.100, 445.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses (pdb code 1r08). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses, PDB code: 1r08:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1r08

Go back to Chlorine Binding Sites List in 1r08
Chlorine binding site 1 out of 2 in the Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Cl900

b:1.0
occ:1.00
CL1 1:W42900 0.0 1.0 1.0
C6B 1:W42900 1.7 1.0 1.0
C1B 1:W42900 2.7 1.0 1.0
C5B 1:W42900 2.7 1.0 1.0
O1B 1:W42900 2.9 1.0 1.0
C5C 1:W42900 3.3 1.0 1.0
CG2 1:VAL188 3.5 1.0 1.0
CD1 3:LEU25 3.5 1.0 1.0
CD2 3:LEU25 3.5 1.0 1.0
CG 3:LEU25 3.7 1.0 1.0
CB 1:VAL188 3.7 1.0 1.0
CD1 1:TYR152 3.9 1.0 1.0
CE1 1:TYR152 4.0 1.0 1.0
C2B 1:W42900 4.0 1.0 1.0
C4B 1:W42900 4.0 1.0 1.0
CG1 1:VAL188 4.2 1.0 1.0
CG 1:TYR152 4.3 1.0 1.0
CZ 1:TYR152 4.3 1.0 1.0
CG1 1:VAL191 4.4 1.0 1.0
C3B 1:W42900 4.5 1.0 1.0
CD2 1:TYR152 4.6 1.0 1.0
CE2 1:TYR152 4.6 1.0 1.0
C4C 1:W42900 4.8 1.0 1.0
OH 1:TYR152 4.9 1.0 1.0
CB 1:TYR152 5.0 1.0 1.0

Chlorine binding site 2 out of 2 in 1r08

Go back to Chlorine Binding Sites List in 1r08
Chlorine binding site 2 out of 2 in the Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Cl900

b:1.0
occ:1.00
CL2 1:W42900 0.0 1.0 1.0
C2B 1:W42900 1.7 1.0 1.0
C3B 1:W42900 2.7 1.0 1.0
C1B 1:W42900 2.7 1.0 1.0
CE 1:MET224 2.9 1.0 1.0
O1B 1:W42900 2.9 1.0 1.0
CD1 1:ILE104 3.1 1.0 1.0
C4C 1:W42900 3.6 1.0 1.0
C5C 1:W42900 3.7 1.0 1.0
CZ 1:TYR128 3.9 1.0 1.0
OH 1:TYR128 3.9 1.0 1.0
C4B 1:W42900 4.0 1.0 1.0
C6B 1:W42900 4.0 1.0 1.0
CE1 1:TYR128 4.1 1.0 1.0
CG1 1:ILE104 4.1 1.0 1.0
C3C 1:W42900 4.2 1.0 1.0
CE2 1:TYR128 4.3 1.0 1.0
C5B 1:W42900 4.5 1.0 1.0
CG2 1:ILE104 4.5 1.0 1.0
SD 1:MET224 4.6 1.0 1.0
CD1 1:TYR128 4.6 1.0 1.0
CZ3 1:TRP102 4.7 1.0 1.0
CD2 1:TYR152 4.8 1.0 1.0
CD2 1:TYR128 4.9 1.0 1.0
CE2 1:TYR152 5.0 1.0 1.0
CB 1:MET224 5.0 1.0 1.0

Reference:

J.Badger, I.Minor, M.A.Oliveira, T.J.Smith, M.G.Rossmann. Structural Analysis of Antiviral Agents That Interact with the Capsid of Human Rhinoviruses. Proteins V. 6 1 1989.
ISSN: ISSN 0887-3585
PubMed: 2558377
DOI: 10.1002/PROT.340060102
Page generated: Thu Jul 10 19:10:54 2025

Last articles

Mg in 6LT4
Mg in 6LY7
Mg in 6LY6
Mg in 6LY3
Mg in 6LX1
Mg in 6LTW
Mg in 6LVW
Mg in 6LUH
Mg in 6LTS
Mg in 6LTU
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy