Chlorine in PDB 1rdm: Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M)

The structure of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M), PDB code: 1rdm was solved by K.K.-S.Ng, K.Drickamer, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.600, 75.400, 57.400, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 24

The structure of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M) also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Chlorine atom in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M) (pdb code 1rdm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M), PDB code: 1rdm:

Chlorine binding site 1 out of 1 in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-Mannopyranoside (1.3 M) within 5.0Å range: probe atom residue distance (Å) B Occ 1:Cl3 b:15.3 occ:1.00 O 1:HOH245 2.7 23.7 1.0 N 1:CYS214 3.1 8.9 1.0 N 1:ASN199 3.2 9.2 1.0 O 1:HOH347 3.4 28.5 1.0 O 1:HOH247 3.5 25.9 1.0 CA 1:PRO213 3.6 10.4 1.0 CB 1:ASN199 3.7 9.1 1.0 SG 1:CYS214 3.8 15.6 1.0 C 1:PRO213 3.8 9.2 1.0 CG 1:ASN199 3.9 8.1 1.0 ND2 1:ASN199 3.9 11.2 1.0 CA 1:ASN199 3.9 9.0 1.0 CB 1:CYS214 3.9 12.3 1.0 CA 1:CYS214 4.1 10.2 1.0 C 1:GLU198 4.1 10.7 1.0 CA 1:GLU198 4.1 10.9 1.0 O 1:GLY197 4.2 15.3 1.0 O 1:VAL212 4.2 8.2 1.0 CB 1:PRO213 4.4 9.6 1.0 C 1:GLY197 4.5 15.5 1.0 N 1:GLU198 4.5 13.6 1.0 N 1:CYS200 4.5 9.0 1.0 C 1:ASN199 4.6 8.9 1.0 OD1 1:ASN199 4.6 10.0 1.0 OE1 1:GLN167 4.6 14.1 1.0 N 1:PRO213 4.7 9.3 1.0 C 1:VAL212 4.9 8.8 1.0 N 1:SER215 5.0 10.5 1.0

K.K.Ng, K.Drickamer, W.I.Weis. Structural Analysis of Monosaccharide Recognition By Rat Liver Mannose-Binding Protein. J.Biol.Chem. V. 271 663 1996.
ISSN: ISSN 0021-9258
PubMed: 8557671
DOI: 10.1074/JBC.271.2.663