Chlorine in PDB 1rdn: Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide

The structure of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide, PDB code: 1rdn was solved by K.K.-S.Ng, K.Drickamer, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.600, 75.200, 57.400, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 23.7

The structure of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Chlorine atom in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide (pdb code 1rdn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide, PDB code: 1rdn:

Chlorine binding site 1 out of 1 in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-D-N-Acetylglucosaminide within 5.0Å range: probe atom residue distance (Å) B Occ 1:Cl3 b:2.0 occ:1.00 O 1:HOH244 2.9 24.9 1.0 N 1:CYS214 3.1 9.5 1.0 O 1:HOH243 3.1 23.2 1.0 N 1:ASN199 3.2 11.1 1.0 O 1:HOH338 3.3 40.3 1.0 O 1:HOH245 3.3 25.9 1.0 CA 1:PRO213 3.5 11.7 1.0 CB 1:ASN199 3.7 11.5 1.0 SG 1:CYS214 3.7 15.7 1.0 C 1:PRO213 3.8 10.7 1.0 CB 1:CYS214 3.9 13.4 1.0 CG 1:ASN199 3.9 11.4 1.0 CA 1:ASN199 3.9 9.3 1.0 ND2 1:ASN199 4.0 10.7 1.0 CA 1:GLU198 4.1 13.5 1.0 CA 1:CYS214 4.1 11.2 1.0 O 1:GLY197 4.1 15.8 1.0 C 1:GLU198 4.1 11.6 1.0 O 1:VAL212 4.2 7.4 1.0 C 1:GLY197 4.4 16.6 1.0 CB 1:PRO213 4.4 12.3 1.0 N 1:GLU198 4.4 14.3 1.0 N 1:CYS200 4.6 8.7 1.0 OD1 1:ASN199 4.6 12.9 1.0 C 1:ASN199 4.6 8.8 1.0 N 1:PRO213 4.6 11.5 1.0 C 1:VAL212 4.9 10.1 1.0 OE1 1:GLN167 4.9 28.1 1.0 N 1:SER215 5.0 12.4 1.0 O 1:PRO213 5.0 11.1 1.0

K.K.Ng, K.Drickamer, W.I.Weis. Structural Analysis of Monosaccharide Recognition By Rat Liver Mannose-Binding Protein. J.Biol.Chem. V. 271 663 1996.
ISSN: ISSN 0021-9258
PubMed: 8557671
DOI: 10.1074/JBC.271.2.663