Atomistry » Chlorine » PDB 1qvf-1rkq » 1rkq
Atomistry »
  Chlorine »
    PDB 1qvf-1rkq »
      1rkq »

Chlorine in PDB 1rkq: Crystal Structure of Had-Like Phosphatase Yida From E. Coli

Protein crystallography data

The structure of Crystal Structure of Had-Like Phosphatase Yida From E. Coli, PDB code: 1rkq was solved by U.A.Ramagopal, S.C.Almo, S.K.Burley, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.50 / 1.40
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.120, 54.871, 67.725, 112.58, 96.37, 106.79
R / Rfree (%) 17.7 / 21.3

Other elements in 1rkq:

The structure of Crystal Structure of Had-Like Phosphatase Yida From E. Coli also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Had-Like Phosphatase Yida From E. Coli (pdb code 1rkq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Had-Like Phosphatase Yida From E. Coli, PDB code: 1rkq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1rkq

Go back to Chlorine Binding Sites List in 1rkq
Chlorine binding site 1 out of 2 in the Crystal Structure of Had-Like Phosphatase Yida From E. Coli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Had-Like Phosphatase Yida From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1272

b:15.0
occ:1.00
O A:HOH1276 3.0 15.5 1.0
N A:GLY45 3.1 12.8 1.0
ND2 A:ASN224 3.1 15.3 1.0
O A:HOH1280 3.2 14.3 1.0
O A:HOH1419 3.3 26.3 1.0
NZ A:LYS198 3.3 13.1 1.0
OD1 A:ASP10 3.4 14.3 1.0
CA A:GLY45 3.7 12.5 1.0
CE A:LYS198 3.8 14.7 1.0
O A:HOH1274 3.9 15.5 1.0
CB A:SER184 3.9 14.6 1.0
CG A:ASN224 4.1 13.8 1.0
O A:HOH1288 4.1 18.1 1.0
C A:THR44 4.2 11.9 1.0
OD1 A:ASN224 4.2 14.4 1.0
OG1 A:THR44 4.2 12.8 1.0
O A:HOH1290 4.2 17.2 1.0
CA A:THR44 4.3 12.5 1.0
CG A:ASP10 4.4 12.9 1.0
OG A:SER184 4.5 16.0 1.0
MG A:MG1273 4.5 14.2 1.0
OD1 A:ASN71 4.6 29.2 1.0
C A:GLY45 4.8 13.0 1.0
OE2 A:GLU190 4.8 17.0 1.0
N A:ARG46 4.8 12.1 1.0
OD2 A:ASP10 4.9 16.7 1.0
CB A:THR44 4.9 12.6 1.0

Chlorine binding site 2 out of 2 in 1rkq

Go back to Chlorine Binding Sites List in 1rkq
Chlorine binding site 2 out of 2 in the Crystal Structure of Had-Like Phosphatase Yida From E. Coli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Had-Like Phosphatase Yida From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2272

b:14.7
occ:1.00
O B:HOH2276 3.0 15.1 1.0
N B:GLY45 3.1 13.1 1.0
ND2 B:ASN224 3.1 15.7 1.0
O B:HOH2359 3.2 23.3 1.0
NZ B:LYS198 3.2 14.4 1.0
O B:HOH2278 3.2 14.6 1.0
OD1 B:ASP10 3.4 14.6 1.0
CA B:GLY45 3.7 12.3 1.0
CE B:LYS198 3.8 14.2 1.0
O B:HOH2275 3.9 13.4 1.0
CB B:SER184 3.9 12.8 1.0
CG B:ASN224 4.1 13.8 1.0
C B:THR44 4.1 12.5 1.0
OD1 B:ASN224 4.1 13.5 1.0
O B:HOH2330 4.1 19.8 1.0
OG1 B:THR44 4.2 12.7 1.0
CA B:THR44 4.2 12.6 1.0
O B:HOH2306 4.2 17.8 1.0
CG B:ASP10 4.4 14.5 1.0
MG B:MG2273 4.5 12.6 1.0
OG B:SER184 4.6 14.8 1.0
C B:GLY45 4.7 12.7 1.0
OD1 B:ASN71 4.7 32.0 1.0
N B:ARG46 4.8 13.3 1.0
CB B:THR44 4.9 13.4 1.0
OD2 B:ASP10 4.9 16.5 1.0
OE2 B:GLU190 4.9 17.4 1.0

Reference:

U.A.Ramagopal, S.C.Almo. Crystal Structure of Nysgrc Target T1436: A Hypothetical Protein Yida. To Be Published.
Page generated: Thu Jul 10 19:16:01 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy