Atomistry » Chlorine » PDB 1rky-1s8f » 1rny
Atomistry »
  Chlorine »
    PDB 1rky-1s8f »
      1rny »

Chlorine in PDB 1rny: Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate

Enzymatic activity of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate

All present enzymatic activity of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate:
3.1.27.5;

Protein crystallography data

The structure of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate, PDB code: 1rny was solved by A.A.Fedorov, D.Joseph-Mccarthy, L.Fedorov, D.Sirakova, I.Graf, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.763, 64.763, 65.338, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1rny:

The structure of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate also contains other interesting chemical elements:

Caesium (Cs) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate (pdb code 1rny). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate, PDB code: 1rny:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 1rny

Go back to Chlorine Binding Sites List in 1rny
Chlorine binding site 1 out of 4 in the Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl125

b:34.2
occ:1.00
 O A:HOH250 3.0 26.9 1.0
NE2 A:HIS12 3.2 6.5 1.0
N A:PHE120 3.3 9.9 1.0
O A:HOH286 3.4 40.0 1.0
ND1 A:HIS119 3.6 27.3 1.0
CA A:HIS119 3.9 13.3 1.0
NE2 A:GLN11 3.9 16.5 1.0
O A:HOH237 3.9 24.6 1.0
O A:HOH299 3.9 60.0 1.0
CE1 A:HIS12 4.0 7.1 1.0
CD2 A:HIS12 4.1 7.2 1.0
C A:HIS119 4.1 10.8 1.0
CB A:PHE120 4.2 10.4 1.0
CA A:PHE120 4.3 11.9 1.0
O A:PHE120 4.4 13.4 1.0
CG A:HIS119 4.4 25.0 1.0
CE1 A:HIS119 4.4 27.1 1.0
CB A:HIS119 4.5 18.2 1.0
O A:VAL118 4.5 13.8 1.0
C A:PHE120 4.8 12.1 1.0

Chlorine binding site 2 out of 4 in 1rny

Go back to Chlorine Binding Sites List in 1rny
Chlorine binding site 2 out of 4 in the Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl126

b:27.9
occ:1.00
 ND2 A:ASN34 2.8 26.7 1.0
O A:HOH277 3.4 35.7 1.0
CD A:ARG10 3.4 8.0 1.0
CG A:ASN34 3.8 24.0 1.0
NE A:ARG10 3.9 9.1 1.0
CB A:ASN34 3.9 22.2 1.0
NH1 A:ARG10 4.4 13.6 1.0
CZ A:ARG10 4.4 11.3 1.0
O A:ARG33 4.8 11.7 1.0
CG A:ARG10 4.9 3.4 1.0
OD1 A:ASN34 4.9 26.1 1.0

Chlorine binding site 3 out of 4 in 1rny

Go back to Chlorine Binding Sites List in 1rny
Chlorine binding site 3 out of 4 in the Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl127

b:27.6
occ:1.00
 O A:HOH286 3.0 40.0 1.0
N A:THR45 3.1 7.3 1.0
CE1 A:HIS12 3.5 7.1 1.0
OG1 A:THR45 3.5 9.1 1.0
CA A:ASN44 3.6 10.1 1.0
C A:ASN44 3.7 9.6 1.0
O A:HOH237 3.9 24.6 1.0
CB A:THR45 3.9 8.5 1.0
CD1 A:PHE120 3.9 14.7 1.0
OD1 A:ASN44 4.0 8.9 1.0
CA A:THR45 4.1 6.6 1.0
ND1 A:HIS12 4.2 8.6 1.0
CB A:PHE120 4.2 10.4 1.0
CG A:PHE120 4.3 13.8 1.0
N A:ASN44 4.3 8.5 1.0
O A:VAL43 4.4 9.6 1.0
NE2 A:HIS12 4.5 6.5 1.0
O A:PHE120 4.6 13.4 1.0
CG A:ASN44 4.6 8.6 1.0
C A:VAL43 4.6 11.5 1.0
CB A:ASN44 4.7 7.9 1.0
CE1 A:PHE120 4.7 15.5 1.0
O A:THR45 4.8 4.9 1.0
CG1 A:VAL43 4.8 13.4 1.0
NZ A:LYS41 4.8 22.9 1.0
O A:ASN44 4.9 11.6 1.0
C A:THR45 5.0 8.1 1.0

Chlorine binding site 4 out of 4 in 1rny

Go back to Chlorine Binding Sites List in 1rny
Chlorine binding site 4 out of 4 in the Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Ribonuclease A Crystallized From 3M Cesium Chloride, 30% Ammonium Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl128

b:24.8
occ:1.00
 OG1 A:THR3 3.0 9.1 1.0
O A:HOH252 3.3 28.5 1.0
CB A:ALA5 4.0 10.6 1.0
CB A:THR3 4.1 11.9 1.0
CG2 A:THR3 4.2 10.5 1.0
O A:HOH240 4.2 26.0 1.0
N A:ALA6 4.2 6.4 1.0
CB A:ALA6 4.4 6.5 1.0
CA A:ALA6 4.7 5.7 1.0
O A:HOH217 4.8 18.1 1.0
C A:ALA5 4.8 8.5 1.0
CA A:ALA5 4.9 9.3 1.0

Reference:

A.A.Fedorov, D.Joseph-Mccarthy, E.Fedorov, D.Sirakova, I.Graf, S.C.Almo. Ionic Interactions in Crystalline Bovine Pancreatic Ribonuclease A. Biochemistry V. 35 15962 1996.
ISSN: ISSN 0006-2960
PubMed: 8973167
DOI: 10.1021/BI961533G
Page generated: Thu Jul 10 19:16:29 2025

Last articles

Fe in 8DZL
Fe in 8DWF
Fe in 8DZK
Fe in 8DY9
Fe in 8DY7
Fe in 8DYC
Fe in 8DYB
Fe in 8DWD
Fe in 8DWE
Fe in 8DWR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy