Chlorine in PDB 1u2e: Crystal Structure of the C-C Bond Hydrolase Mhpc
Protein crystallography data
The structure of Crystal Structure of the C-C Bond Hydrolase Mhpc, PDB code: 1u2e
was solved by
M.G.Montgomery,
G.Dunn,
F.Mohammed,
T.Robertson,
J.-L.Garcia,
A.Coker,
T.D.H.Bugg,
S.P.Wood,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.10
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
144.858,
144.154,
62.107,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.9 /
27.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the C-C Bond Hydrolase Mhpc
(pdb code 1u2e). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of the C-C Bond Hydrolase Mhpc, PDB code: 1u2e:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1u2e
Go back to
Chlorine Binding Sites List in 1u2e
Chlorine binding site 1 out
of 4 in the Crystal Structure of the C-C Bond Hydrolase Mhpc
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the C-C Bond Hydrolase Mhpc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1002
b:41.3
occ:1.00
|
NH2
|
A:ARG188
|
3.1
|
59.5
|
1.0
|
N
|
A:GLY41
|
3.1
|
28.0
|
1.0
|
O
|
A:HOH1073
|
3.3
|
44.2
|
1.0
|
CB
|
A:ALA44
|
3.5
|
35.2
|
1.0
|
CA
|
A:GLY41
|
3.6
|
35.1
|
1.0
|
CA
|
A:GLY39
|
3.7
|
29.8
|
1.0
|
C
|
A:GLY39
|
3.7
|
33.6
|
1.0
|
N
|
A:SER40
|
3.8
|
27.5
|
1.0
|
ND2
|
A:ASN49
|
3.9
|
28.2
|
1.0
|
OD1
|
A:ASN49
|
4.1
|
38.9
|
1.0
|
CZ
|
A:ARG188
|
4.1
|
53.7
|
1.0
|
N
|
A:GLY39
|
4.2
|
37.2
|
1.0
|
C
|
A:SER40
|
4.3
|
29.1
|
1.0
|
CZ
|
A:PHE173
|
4.3
|
35.7
|
1.0
|
O
|
A:GLY39
|
4.3
|
35.1
|
1.0
|
NH1
|
A:ARG188
|
4.3
|
54.4
|
1.0
|
CG
|
A:ASN49
|
4.4
|
36.2
|
1.0
|
C
|
A:GLY41
|
4.5
|
33.5
|
1.0
|
CA
|
A:SER40
|
4.6
|
29.8
|
1.0
|
O
|
A:GLY41
|
4.6
|
29.9
|
1.0
|
O
|
A:HOH1057
|
4.7
|
38.5
|
1.0
|
CA
|
A:ALA44
|
4.9
|
34.9
|
1.0
|
CE1
|
A:PHE173
|
5.0
|
35.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1u2e
Go back to
Chlorine Binding Sites List in 1u2e
Chlorine binding site 2 out
of 4 in the Crystal Structure of the C-C Bond Hydrolase Mhpc
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the C-C Bond Hydrolase Mhpc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1285
b:47.1
occ:1.00
|
NH2
|
B:ARG1188
|
3.3
|
42.9
|
0.0
|
N
|
B:GLY1041
|
3.4
|
35.2
|
1.0
|
CA
|
B:GLY1039
|
3.5
|
30.0
|
1.0
|
ND2
|
B:ASN1049
|
3.7
|
31.8
|
1.0
|
OD1
|
B:ASN1049
|
3.7
|
43.3
|
1.0
|
C
|
B:GLY1039
|
3.7
|
36.5
|
1.0
|
CA
|
B:GLY1041
|
3.8
|
37.4
|
1.0
|
N
|
B:GLY1039
|
3.9
|
31.8
|
1.0
|
N
|
B:SER1040
|
3.9
|
35.2
|
1.0
|
CB
|
B:ALA1044
|
4.0
|
33.2
|
1.0
|
CG
|
B:ASN1049
|
4.1
|
39.5
|
1.0
|
O
|
B:GLY1039
|
4.3
|
35.2
|
1.0
|
C
|
B:SER1040
|
4.5
|
35.5
|
1.0
|
CZ
|
B:PHE1173
|
4.5
|
52.7
|
1.0
|
CZ
|
B:ARG1188
|
4.5
|
43.1
|
0.0
|
OD1
|
B:ASN1109
|
4.5
|
59.5
|
1.0
|
CE1
|
B:PHE1173
|
4.8
|
55.7
|
1.0
|
CA
|
B:SER1040
|
4.8
|
35.4
|
1.0
|
C
|
B:GLY1041
|
4.9
|
40.4
|
1.0
|
NH1
|
B:ARG1188
|
4.9
|
42.9
|
0.0
|
|
Chlorine binding site 3 out
of 4 in 1u2e
Go back to
Chlorine Binding Sites List in 1u2e
Chlorine binding site 3 out
of 4 in the Crystal Structure of the C-C Bond Hydrolase Mhpc
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the C-C Bond Hydrolase Mhpc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1003
b:37.0
occ:1.00
|
O
|
C:HOH215
|
3.1
|
40.4
|
1.0
|
NH2
|
C:ARG2188
|
3.1
|
53.6
|
1.0
|
O
|
C:HOH1
|
3.2
|
37.0
|
1.0
|
N
|
C:GLY2041
|
3.2
|
28.7
|
1.0
|
CB
|
C:ALA2044
|
3.6
|
26.8
|
1.0
|
CA
|
C:GLY2041
|
3.6
|
32.5
|
1.0
|
ND2
|
C:ASN2049
|
3.7
|
32.5
|
1.0
|
CA
|
C:GLY2039
|
3.8
|
26.8
|
1.0
|
C
|
C:GLY2039
|
3.8
|
33.2
|
1.0
|
N
|
C:SER2040
|
3.9
|
29.7
|
1.0
|
OD1
|
C:ASN2049
|
3.9
|
33.6
|
1.0
|
CZ
|
C:ARG2188
|
4.0
|
40.8
|
1.0
|
CZ
|
C:PHE2173
|
4.1
|
44.1
|
1.0
|
N
|
C:GLY2039
|
4.3
|
30.0
|
1.0
|
O
|
C:GLY2039
|
4.3
|
38.0
|
1.0
|
CG
|
C:ASN2049
|
4.3
|
35.1
|
1.0
|
C
|
C:SER2040
|
4.4
|
31.9
|
1.0
|
NH1
|
C:ARG2188
|
4.4
|
40.0
|
1.0
|
C
|
C:GLY2041
|
4.5
|
32.6
|
1.0
|
O
|
C:GLY2041
|
4.5
|
31.4
|
1.0
|
CA
|
C:SER2040
|
4.7
|
30.2
|
1.0
|
NE
|
C:ARG2188
|
4.8
|
50.7
|
1.0
|
O
|
C:HOH246
|
4.8
|
28.3
|
1.0
|
CE1
|
C:PHE2173
|
4.9
|
38.3
|
1.0
|
ND2
|
C:ASN2109
|
4.9
|
38.8
|
1.0
|
CE2
|
C:PHE2173
|
4.9
|
33.0
|
1.0
|
CA
|
C:ALA2044
|
4.9
|
32.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1u2e
Go back to
Chlorine Binding Sites List in 1u2e
Chlorine binding site 4 out
of 4 in the Crystal Structure of the C-C Bond Hydrolase Mhpc
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the C-C Bond Hydrolase Mhpc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl1001
b:36.7
occ:1.00
|
O
|
D:HOH184
|
3.2
|
29.7
|
1.0
|
N
|
D:GLY3041
|
3.3
|
27.2
|
1.0
|
NH2
|
D:ARG3188
|
3.5
|
65.3
|
1.0
|
ND2
|
D:ASN3049
|
3.6
|
30.2
|
1.0
|
CB
|
D:ALA3044
|
3.6
|
33.2
|
1.0
|
CA
|
D:GLY3041
|
3.7
|
33.2
|
1.0
|
CA
|
D:GLY3039
|
3.7
|
29.3
|
1.0
|
OD1
|
D:ASN3049
|
3.8
|
41.2
|
1.0
|
C
|
D:GLY3039
|
3.8
|
28.6
|
1.0
|
CZ
|
D:ARG3188
|
4.0
|
57.9
|
1.0
|
N
|
D:SER3040
|
4.1
|
28.4
|
1.0
|
CG
|
D:ASN3049
|
4.1
|
40.1
|
1.0
|
CZ
|
D:PHE3173
|
4.2
|
31.7
|
1.0
|
N
|
D:GLY3039
|
4.2
|
28.4
|
1.0
|
NH1
|
D:ARG3188
|
4.2
|
57.5
|
1.0
|
O
|
D:GLY3039
|
4.3
|
26.5
|
1.0
|
C
|
D:SER3040
|
4.5
|
25.8
|
1.0
|
C
|
D:GLY3041
|
4.6
|
33.1
|
1.0
|
O
|
D:HOH354
|
4.6
|
35.1
|
1.0
|
ND2
|
D:ASN3109
|
4.7
|
39.3
|
1.0
|
O
|
D:GLY3041
|
4.7
|
35.4
|
1.0
|
CE2
|
D:PHE3173
|
4.8
|
30.0
|
1.0
|
CA
|
D:ALA3044
|
4.9
|
32.7
|
1.0
|
CA
|
D:SER3040
|
4.9
|
28.0
|
1.0
|
NE
|
D:ARG3188
|
5.0
|
58.2
|
1.0
|
CE1
|
D:PHE3173
|
5.0
|
30.4
|
1.0
|
|
Reference:
G.Dunn,
M.G.Montgomery,
F.Mohammed,
A.Coker,
J.B.Cooper,
T.Robertson,
J.-L.Garcia,
T.D.H.Bugg,
S.P.Wood.
The Structure of the C-C Bond Hydrolase Mhpc Provides Insights Into Its Catalytic Mechanism J.Mol.Biol. V. 346 253 2005.
ISSN: ISSN 0022-2836
PubMed: 15663942
DOI: 10.1016/J.JMB.2004.11.033
Page generated: Sat Jul 20 02:38:38 2024
|