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Chlorine in PDB 1ukm: Crystal Structure of EMS16, An Antagonist of Collagen Receptor Integrin ALPHA2BETA1 (Gpia/Iia)

Protein crystallography data

The structure of Crystal Structure of EMS16, An Antagonist of Collagen Receptor Integrin ALPHA2BETA1 (Gpia/Iia), PDB code: 1ukm was solved by K.Horii, D.Okuda, T.Morita, H.Mizuno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.36 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.570, 59.933, 115.743, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of EMS16, An Antagonist of Collagen Receptor Integrin ALPHA2BETA1 (Gpia/Iia) (pdb code 1ukm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of EMS16, An Antagonist of Collagen Receptor Integrin ALPHA2BETA1 (Gpia/Iia), PDB code: 1ukm:

Chlorine binding site 1 out of 1 in 1ukm

Go back to Chlorine Binding Sites List in 1ukm
Chlorine binding site 1 out of 1 in the Crystal Structure of EMS16, An Antagonist of Collagen Receptor Integrin ALPHA2BETA1 (Gpia/Iia)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of EMS16, An Antagonist of Collagen Receptor Integrin ALPHA2BETA1 (Gpia/Iia) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1304

b:26.6
occ:1.00
O A:HOH1339 3.1 24.3 1.0
O B:HOH1362 3.1 36.4 1.0
O B:HOH1311 3.1 21.9 1.0
NH1 A:ARG73 3.4 25.1 1.0
NE A:ARG73 3.4 21.9 1.0
CH2 A:TRP25 3.7 14.8 1.0
NE A:ARG75 3.7 24.8 1.0
CB B:SER79 3.7 18.7 1.0
CA B:SER79 3.7 18.0 1.0
CZ A:ARG73 3.8 27.6 1.0
CZ A:ARG75 4.0 30.5 1.0
NH1 A:ARG75 4.0 29.0 1.0
CZ3 A:TRP25 4.3 16.3 1.0
CD A:ARG75 4.4 25.2 1.0
CD A:ARG73 4.5 20.3 1.0
N B:SER79 4.6 19.2 1.0
CZ2 A:TRP25 4.6 16.6 1.0
O A:HOH1438 4.6 55.9 1.0
O B:SER79 4.7 20.1 1.0
CG A:ARG75 4.7 27.8 1.0
C B:SER79 4.8 22.4 1.0
CG A:ARG73 4.8 24.0 1.0
O A:HOH1439 4.8 30.4 1.0
NH2 A:ARG75 4.9 22.8 1.0

Reference:

K.Horii, D.Okuda, T.Morita, H.Mizuno. Structural Characterization of EMS16, An Antagonist of Collagen Receptor (Gpia/Iia) From the Venom of Echis Multisquamatus Biochemistry V. 42 12497 2003.
ISSN: ISSN 0006-2960
PubMed: 14580195
DOI: 10.1021/BI034890H
Page generated: Sat Jul 20 02:45:47 2024

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