Atomistry » Chlorine » PDB 1uum-1v8f » 1v8f
Atomistry »
  Chlorine »
    PDB 1uum-1v8f »
      1v8f »

Chlorine in PDB 1v8f: Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8

Enzymatic activity of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8:
6.3.2.1;

Protein crystallography data

The structure of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8, PDB code: 1v8f was solved by B.Bagautdinov, T.H.Tahirov, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.514, 88.514, 266.720, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 25.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8 (pdb code 1v8f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8, PDB code: 1v8f:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1v8f

Go back to Chlorine Binding Sites List in 1v8f
Chlorine binding site 1 out of 5 in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1301

b:27.3
occ:1.00
 NH2 A:ARG117 3.3 19.9 1.0
NH2 A:ARG183 3.3 22.8 1.0
NE2 A:GLN56 3.3 20.7 1.0
NH1 A:ARG117 3.4 17.1 1.0
O A:HOH1752 3.4 48.4 1.0
NH1 A:ARG183 3.5 25.6 1.0
CE1 A:HIS120 3.6 21.9 1.0
CE A:MET25 3.6 23.3 1.0
CZ A:ARG117 3.8 19.8 1.0
CZ A:ARG183 3.9 26.8 1.0
CG A:GLN56 4.1 23.0 1.0
CD A:GLN56 4.2 22.1 1.0
ND1 A:HIS120 4.3 21.8 1.0
O A:GLN56 4.4 23.1 1.0
O2 A:1441501 4.5 57.8 1.0
CZ A:PHE57 4.5 20.5 1.0
NE2 A:HIS120 4.5 20.0 1.0
CE1 A:PHE57 4.7 23.1 1.0
CE2 A:PHE57 4.7 21.8 1.0
SD A:MET25 4.8 24.7 1.0
CB A:GLN56 5.0 20.7 1.0

Chlorine binding site 2 out of 5 in 1v8f

Go back to Chlorine Binding Sites List in 1v8f
Chlorine binding site 2 out of 5 in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1303

b:36.6
occ:1.00
 N A:GLY60 3.0 25.0 1.0
O A:HOH1823 3.4 49.7 1.0
CD A:PRO59 3.5 26.7 1.0
N A:PRO59 3.5 25.2 1.0
C A:GLY58 3.6 24.4 1.0
CA A:GLY60 3.6 25.9 1.0
CA A:GLY58 3.7 24.2 1.0
CG A:PRO59 3.7 28.6 1.0
C A:PRO59 4.0 28.1 1.0
C A:GLY60 4.1 24.3 1.0
N A:GLU61 4.1 23.4 1.0
CG A:GLU61 4.1 22.8 1.0
CA A:PRO59 4.2 27.5 1.0
O A:GLY58 4.2 23.5 1.0
O A:HOH1724 4.6 57.9 1.0
O A:HOH1762 4.6 48.7 1.0
CB A:PRO59 4.7 26.3 1.0
CD A:GLU61 4.7 23.8 1.0
N A:GLY58 4.7 21.4 1.0
O A:GLY60 4.9 25.7 1.0
OE1 A:GLU61 5.0 25.3 1.0
CB A:GLU61 5.0 24.0 1.0

Chlorine binding site 3 out of 5 in 1v8f

Go back to Chlorine Binding Sites List in 1v8f
Chlorine binding site 3 out of 5 in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1305

b:43.7
occ:1.00
 O A:HOH1966 3.1 56.7 1.0
O A:HOH1630 3.1 26.6 1.0
N A:MET25 3.2 21.7 1.0
NE2 A:HIS32 3.3 26.6 1.0
O4 A:1441501 3.5 54.6 1.0
CA A:THR24 3.7 22.8 1.0
CB A:THR24 3.9 24.2 1.0
C A:THR24 3.9 23.1 1.0
CD2 A:HIS32 4.0 27.4 1.0
O A:HOH1905 4.1 29.6 1.0
CB A:MET25 4.1 19.7 1.0
CA A:MET25 4.2 21.9 1.0
O A:HOH1725 4.3 45.1 1.0
CE1 A:HIS32 4.3 26.2 1.0
CG A:MET25 4.3 22.7 1.0
C4 A:1441501 4.5 52.3 1.0
OH A:TYR66 4.6 24.6 1.0
CG2 A:THR24 4.8 22.3 1.0
C A:MET25 4.8 22.5 1.0
N A:GLY26 4.8 22.8 1.0
O2 A:1441501 4.9 57.8 1.0
O A:HOH1813 4.9 40.7 1.0
O A:PRO23 4.9 24.9 1.0
OG1 A:THR24 5.0 25.1 1.0

Chlorine binding site 4 out of 5 in 1v8f

Go back to Chlorine Binding Sites List in 1v8f
Chlorine binding site 4 out of 5 in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1302

b:35.8
occ:1.00
 O B:HOH1613 3.0 45.3 1.0
NH2 B:ARG117 3.3 26.3 1.0
NH1 B:ARG117 3.3 28.1 1.0
NH1 B:ARG183 3.3 39.4 1.0
NE2 B:GLN56 3.3 27.2 1.0
NH2 B:ARG183 3.5 39.0 1.0
CE1 B:HIS120 3.6 29.6 1.0
CE B:MET25 3.7 33.7 1.0
CZ B:ARG117 3.7 27.6 1.0
CZ B:ARG183 3.8 41.9 1.0
CG B:GLN56 4.2 28.5 1.0
CD B:GLN56 4.2 27.0 1.0
ND1 B:HIS120 4.2 29.1 1.0
O B:GLN56 4.4 28.0 1.0
CZ B:PHE57 4.5 35.2 1.0
NE2 B:HIS120 4.5 29.7 1.0
CE2 B:PHE57 4.7 34.1 1.0
CE1 B:PHE57 4.7 34.1 1.0
CB B:GLN56 5.0 27.9 1.0
SD B:MET25 5.0 36.8 1.0

Chlorine binding site 5 out of 5 in 1v8f

Go back to Chlorine Binding Sites List in 1v8f
Chlorine binding site 5 out of 5 in the Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Pantoate-Beta-Alanine (Pantothenate Synthetase) From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1304

b:60.8
occ:1.00
 NE2 B:HIS32 3.3 43.2 1.0
O B:HOH1588 3.4 34.8 1.0
N B:MET25 3.6 32.9 1.0
O1 B:GOL1401 3.7 50.0 1.0
O B:HOH1628 3.9 55.8 1.0
CA B:THR24 4.0 30.2 1.0
CD2 B:HIS32 4.0 42.2 1.0
O B:HOH1563 4.1 39.5 1.0
CB B:THR24 4.3 29.8 1.0
C B:THR24 4.3 28.7 1.0
CE1 B:HIS32 4.3 42.6 1.0
CB B:MET25 4.4 33.5 1.0
CG B:MET25 4.5 35.8 1.0
O B:HOH1679 4.5 65.5 1.0
CA B:MET25 4.5 33.5 1.0
OH B:TYR66 4.7 43.3 1.0
O B:PRO23 5.0 32.3 1.0

Reference:

B.Bagautdinov, T.H.Tahirov. Crystal Structure of Pantothenate Synthetase From Thermus Thermophilus HB8 To Be Published.
Page generated: Thu Jul 10 19:50:59 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy