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Chlorine in PDB 1vr5: Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution

Protein crystallography data

The structure of Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution, PDB code: 1vr5 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.61 / 1.73
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 140.030, 96.640, 115.780, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 18.2

Other elements in 1vr5:

The structure of Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution (pdb code 1vr5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution, PDB code: 1vr5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1vr5

Go back to Chlorine Binding Sites List in 1vr5
Chlorine binding site 1 out of 2 in the Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3

b:40.6
occ:1.00
O A:HOH1149 2.9 53.8 1.0
ND2 A:ASN128 3.2 31.4 1.0
NH1 A:ARG149 3.4 28.2 1.0
NH2 A:ARG149 3.5 23.8 1.0
CB A:ASN128 3.8 25.1 1.0
CZ A:ARG149 3.9 25.6 1.0
CG A:ASN128 4.0 30.0 1.0
O A:PRO125 4.0 23.6 1.0
CB A:PRO125 4.1 24.2 1.0
CD1 A:TRP129 4.4 19.8 1.0
O1 A:EDO564 4.4 33.8 1.0
O A:HOH1006 4.5 54.0 1.0
C A:PRO125 4.7 21.4 1.0
NE1 A:TRP129 4.7 19.4 1.0
CA A:PRO125 4.8 23.6 1.0

Chlorine binding site 2 out of 2 in 1vr5

Go back to Chlorine Binding Sites List in 1vr5
Chlorine binding site 2 out of 2 in the Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (TM1223) From Thermotoga Maritima at 1.73 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl4

b:43.1
occ:1.00
O B:HOH1023 3.0 60.8 1.0
ND2 B:ASN128 3.2 25.8 1.0
NH2 B:ARG149 3.4 24.5 1.0
NH1 B:ARG149 3.5 24.0 1.0
CZ B:ARG149 3.9 23.9 1.0
CB B:ASN128 3.9 21.1 1.0
CB B:PRO125 3.9 25.2 1.0
O B:PRO125 4.0 23.9 1.0
CG B:ASN128 4.0 24.6 1.0
CD1 B:TRP129 4.3 21.1 1.0
O1 B:EDO17 4.5 31.6 1.0
C B:PRO125 4.7 23.0 1.0
NE1 B:TRP129 4.7 23.2 1.0
CA B:PRO125 4.7 23.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Jul 10 20:06:48 2025

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