Atomistry » Chlorine » PDB 1vq5-1wbo » 1vzi
Atomistry »
  Chlorine »
    PDB 1vq5-1wbo »
      1vzi »

Chlorine in PDB 1vzi: Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction

Enzymatic activity of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction

All present enzymatic activity of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction:
1.15.1.2;

Protein crystallography data

The structure of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction, PDB code: 1vzi was solved by V.Adam, A.Royant, V.Niviere, F.P.Molina-Heredia, D.Bourgeois, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.15
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 123.608, 123.608, 73.016, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1vzi:

The structure of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction (pdb code 1vzi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction, PDB code: 1vzi:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1vzi

Go back to Chlorine Binding Sites List in 1vzi
Chlorine binding site 1 out of 5 in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1128

b:19.6
occ:1.00
 O A:HOH2149 3.0 27.1 1.0
O A:HOH2139 3.1 20.1 1.0
O A:HOH2058 3.2 43.7 1.0
CE1 A:HIS48 3.6 11.8 1.0
CE1 A:HIS74 3.7 13.1 1.0
CE1 A:HIS118 3.8 12.2 1.0
CD A:LYS47 4.0 17.2 1.0
ND1 A:HIS118 4.2 11.2 1.0
FE A:FE21132 4.2 11.9 1.0
NE2 A:HIS48 4.3 11.7 1.0
NE2 A:HIS74 4.4 11.7 1.0
NE2 A:HIS68 4.4 11.2 1.0
CB A:LYS47 4.5 13.6 1.0
CD2 A:HIS68 4.5 11.4 1.0
CD A:PRO69 4.6 14.2 1.0
ND1 A:HIS48 4.6 12.2 1.0
ND1 A:HIS74 4.7 12.9 1.0
NE2 A:HIS118 4.7 11.9 1.0
CG A:LYS47 4.8 16.0 1.0
CB A:ALA44 4.8 20.2 1.0
CE A:LYS47 4.9 17.9 1.0
NZ A:LYS47 4.9 21.5 1.0
CG A:PRO69 4.9 17.0 1.0

Chlorine binding site 2 out of 5 in 1vzi

Go back to Chlorine Binding Sites List in 1vzi
Chlorine binding site 2 out of 5 in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1129

b:19.4
occ:1.00
 O A:HOH2008 3.0 53.4 1.0
O A:HOH2073 3.0 25.1 1.0
CL A:CL1130 3.1 28.8 1.0
N A:GLY21 3.2 11.4 1.0
NE A:ARG3 3.8 19.5 1.0
CA A:ASN20 3.8 11.7 1.0
OD1 A:ASN20 3.9 15.3 1.0
CB A:ARG3 3.9 12.1 1.0
O A:HOH2014 3.9 22.3 1.0
C A:ASN20 3.9 11.0 1.0
NH2 A:ARG3 4.1 28.7 1.0
CA A:GLY21 4.1 11.6 1.0
CZ A:ARG3 4.2 21.0 1.0
CG A:ASN20 4.3 13.1 1.0
O A:LEU19 4.3 11.8 1.0
O A:HOH2031 4.4 64.4 1.0
CG A:ARG3 4.6 14.8 1.0
CD A:ARG3 4.6 16.5 1.0
N A:ARG3 4.6 10.9 1.0
CB A:ASN20 4.6 12.8 1.0
CA A:ARG3 4.7 10.8 1.0
N A:ASN20 4.8 11.6 1.0
O A:HOH2012 4.8 52.9 1.0
C A:LEU19 4.9 10.5 1.0
ND2 A:ASN20 5.0 15.3 1.0
O A:GLY21 5.0 17.4 1.0
C A:GLY21 5.0 12.2 1.0

Chlorine binding site 3 out of 5 in 1vzi

Go back to Chlorine Binding Sites List in 1vzi
Chlorine binding site 3 out of 5 in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1130

b:28.8
occ:1.00
 O A:HOH2012 2.9 52.9 1.0
N A:ARG3 3.1 10.9 1.0
CL A:CL1129 3.1 19.4 1.0
O A:HOH2006 3.2 59.0 1.0
O A:HOH2008 3.4 53.4 1.0
CA A:GLU2 3.6 12.2 1.0
CB A:ARG3 3.8 12.1 1.0
C A:GLU2 3.9 10.6 1.0
CA A:GLY21 4.0 11.6 1.0
N A:GLY21 4.0 11.4 1.0
CA A:ARG3 4.0 10.8 1.0
CB A:GLU2 4.1 15.5 1.0
O A:HOH2003 4.2 49.7 1.0
CG A:GLU2 4.5 20.5 1.0
O A:PRO1 4.6 12.2 1.0
O A:HOH2017 4.6 40.0 1.0
N A:GLU2 4.8 11.2 1.0
C A:GLY21 5.0 12.2 1.0

Chlorine binding site 4 out of 5 in 1vzi

Go back to Chlorine Binding Sites List in 1vzi
Chlorine binding site 4 out of 5 in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1126

b:22.3
occ:0.50
 CL B:CL1126 0.0 22.3 0.5
CL B:CL1126 2.2 19.8 0.5
O B:HOH2157 2.9 32.6 1.0
O B:HOH2150 3.0 44.0 1.0
CE1 B:HIS48 3.6 14.2 1.0
CE1 B:HIS118 3.7 16.1 1.0
CD B:LYS47 3.8 20.6 1.0
CE1 B:HIS74 3.8 14.9 1.0
ND1 B:HIS118 4.1 14.4 1.0
FE B:FE21128 4.4 14.6 1.0
NE2 B:HIS74 4.4 14.9 1.0
NE2 B:HIS48 4.5 13.7 1.0
NE2 B:HIS118 4.5 16.2 1.0
CB B:LYS47 4.5 15.6 1.0
ND1 B:HIS48 4.6 13.8 1.0
CE B:LYS47 4.6 23.5 1.0
CG B:LYS47 4.6 17.2 1.0
O B:HOH2061 4.6 57.6 1.0
CB B:ALA44 4.7 17.1 1.0
NE2 B:HIS68 4.7 14.3 1.0
NZ B:LYS47 4.8 25.0 1.0
ND1 B:HIS74 4.9 13.7 1.0
CD2 B:HIS68 4.9 14.7 1.0
O B:HOH2250 4.9 39.6 1.0

Chlorine binding site 5 out of 5 in 1vzi

Go back to Chlorine Binding Sites List in 1vzi
Chlorine binding site 5 out of 5 in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1126

b:19.8
occ:0.50
 CL B:CL1126 0.0 19.8 0.5
CL B:CL1126 2.2 22.3 0.5
N B:ALA44 3.2 15.4 1.0
O B:HOH2150 3.4 44.0 1.0
CE1 B:HIS48 3.4 14.2 1.0
CB B:ALA44 3.6 17.1 1.0
CE1 B:HIS118 3.7 16.1 1.0
NE2 B:HIS118 3.9 16.2 1.0
CA B:ALA44 4.0 16.1 1.0
ND1 B:HIS48 4.1 13.8 1.0
ND1 B:HIS118 4.1 14.4 1.0
C B:ALA43 4.2 16.1 1.0
CA B:ALA43 4.2 18.9 1.0
CB B:ALA43 4.3 22.1 1.0
O B:HOH2250 4.4 39.6 1.0
CD2 B:HIS118 4.5 16.4 1.0
CG B:HIS118 4.6 14.4 1.0
NE2 B:HIS48 4.6 13.7 1.0
O B:ALA44 4.9 14.9 1.0
C B:ALA44 4.9 14.2 1.0
O B:HOH2157 4.9 32.6 1.0

Reference:

V.Adam, A.Royant, V.Niviere, F.P.Molina-Heredia, D.Bourgeois. Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray-Induced Photo-Reduction. Structure V. 12 1729 2004.
ISSN: ISSN 0969-2126
PubMed: 15341736
DOI: 10.1016/J.STR.2004.07.013
Page generated: Thu Jul 10 20:09:32 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy