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Chlorine in PDB 1y4h: Wild Type Staphopain-Staphostatin Complex

Protein crystallography data

The structure of Wild Type Staphopain-Staphostatin Complex, PDB code: 1y4h was solved by R.Filipek, J.Potempa, M.Bochtler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.93
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.948, 77.520, 84.891, 90.00, 108.10, 90.00
R / Rfree (%) 18.8 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Wild Type Staphopain-Staphostatin Complex (pdb code 1y4h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Wild Type Staphopain-Staphostatin Complex, PDB code: 1y4h:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 1y4h

Go back to Chlorine Binding Sites List in 1y4h
Chlorine binding site 1 out of 4 in the Wild Type Staphopain-Staphostatin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Wild Type Staphopain-Staphostatin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl453

b:70.9
occ:1.00
N A:HIS337 3.5 35.5 1.0
CD2 A:HIS337 3.6 40.8 1.0
CB A:HIS337 3.9 37.8 1.0
O A:HOH153 4.0 48.0 1.0
CG A:HIS337 4.0 41.0 1.0
CA A:PRO336 4.1 35.2 1.0
C A:PRO336 4.3 35.8 1.0
CA A:HIS337 4.3 37.1 1.0
NE2 A:HIS337 4.7 41.7 1.0
CB A:PRO336 4.9 35.8 1.0
O A:HIS337 4.9 37.8 1.0
O A:ASP335 5.0 34.3 1.0

Chlorine binding site 2 out of 4 in 1y4h

Go back to Chlorine Binding Sites List in 1y4h
Chlorine binding site 2 out of 4 in the Wild Type Staphopain-Staphostatin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Wild Type Staphopain-Staphostatin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl450

b:51.2
occ:0.53
O C:HOH497 3.7 43.1 1.0
N C:HIS50 3.7 36.8 1.0
ND2 C:ASN8 4.0 34.7 1.0
CA C:SER49 4.0 35.4 1.0
ND1 C:HIS50 4.2 51.5 1.0
CB C:SER49 4.2 35.2 1.0
C C:SER49 4.4 36.0 1.0
OG C:SER49 4.4 34.9 1.0
CB C:HIS50 4.6 38.8 1.0
CA C:HIS50 4.6 37.6 1.0
O C:HIS50 4.7 36.0 1.0
CG C:HIS50 4.8 44.3 1.0

Chlorine binding site 3 out of 4 in 1y4h

Go back to Chlorine Binding Sites List in 1y4h
Chlorine binding site 3 out of 4 in the Wild Type Staphopain-Staphostatin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Wild Type Staphopain-Staphostatin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl452

b:69.1
occ:1.00
O C:HOH480 2.8 44.3 1.0
N C:HIS18 3.3 32.7 1.0
CB C:HIS18 3.9 36.4 1.0
CB C:THR17 3.9 31.3 1.0
CA C:THR17 4.0 31.6 1.0
C C:THR17 4.1 32.5 1.0
CA C:HIS18 4.2 35.1 1.0
CG2 C:THR17 4.7 30.7 1.0
N C:LEU19 4.9 33.6 1.0
OG1 C:THR17 4.9 28.6 1.0

Chlorine binding site 4 out of 4 in 1y4h

Go back to Chlorine Binding Sites List in 1y4h
Chlorine binding site 4 out of 4 in the Wild Type Staphopain-Staphostatin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Wild Type Staphopain-Staphostatin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl451

b:55.9
occ:0.40
N D:HIS50 3.6 43.4 1.0
ND1 D:HIS50 3.8 46.0 1.0
CA D:SER49 4.1 44.3 1.0
CB D:HIS50 4.2 43.2 1.0
ND2 D:ASN8 4.3 33.5 1.0
C D:SER49 4.4 43.7 1.0
CA D:HIS50 4.5 42.9 1.0
CG D:HIS50 4.5 44.2 1.0
CB D:SER49 4.5 44.0 1.0
O D:HIS50 4.7 42.0 1.0
CE1 D:HIS50 4.9 47.0 1.0
OG D:SER49 4.9 43.7 1.0

Reference:

R.Filipek, J.Potempa, M.Bochtler. A Comparison of Staphostatin B with Standard Mechanism Serine Protease Inhibitors. J.Biol.Chem. V. 280 14669 2005.
ISSN: ISSN 0021-9258
PubMed: 15644332
DOI: 10.1074/JBC.M411792200
Page generated: Thu Jul 10 20:31:45 2025

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