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Chlorine in PDB 1yvf: Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145

Enzymatic activity of Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145

All present enzymatic activity of Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145:
2.7.7.48;

Protein crystallography data

The structure of Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145, PDB code: 1yvf was solved by J.A.Pfefferkorn, M.L.Greene, R.A.Nugent, R.J.Gross, M.A.Mitchell, B.C.Finzel, M.S.Harris, P.A.Wells, J.A.Shelly, R.A.Anstadt, R.E.Kilkuskie, L.A.Kopta, F.J.Schwende, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.879, 90.879, 188.516, 90.00, 90.00, 120.00
R / Rfree (%) 24 / 30.3

Other elements in 1yvf:

The structure of Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145 also contains other interesting chemical elements:

Bromine (Br) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145 (pdb code 1yvf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145, PDB code: 1yvf:

Chlorine binding site 1 out of 1 in 1yvf

Go back to Chlorine Binding Sites List in 1yvf
Chlorine binding site 1 out of 1 in the Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hepatitis C Virus NS5B Rna-Dependent Rna Polymerase Complex with Inhibitor Pha-00729145 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl701

b:56.1
occ:0.50
N A:GLY480 3.3 42.5 1.0
CA A:GLY480 3.9 41.6 1.0
CD A:PRO479 3.9 49.0 1.0
CB A:SER478 4.0 47.2 1.0
N A:PRO479 4.1 47.5 1.0
OG A:SER478 4.2 49.5 1.0
CB A:PRO479 4.3 47.9 1.0
C A:PRO479 4.4 45.3 1.0
C A:SER478 4.4 47.9 1.0
CA A:PRO479 4.5 46.7 1.0
CG A:PRO479 4.6 49.9 1.0
CA A:SER478 4.6 49.2 1.0
O3 A:PO4702 4.9 73.8 1.0

Reference:

J.A.Pfefferkorn, M.L.Greene, R.A.Nugent, R.J.Gross, M.A.Mitchell, B.C.Finzel, M.S.Harris, P.A.Wells, J.A.Shelly, R.A.Anstadt, R.E.Kilkuskie, L.A.Kopta, F.J.Schwende. Inhibitors of Hcv NS5B Polymerase. Part 1: Evaluation of the Southern Region of (2Z)-2-(Benzoylamino)-3-(5-Phenyl-2-Furyl)Acrylic Acid. Bioorg.Med.Chem.Lett. V. 15 2481 2005.
ISSN: ISSN 0960-894X
PubMed: 15863301
DOI: 10.1016/J.BMCL.2005.03.066
Page generated: Thu Jul 10 20:46:26 2025

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